Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zootermopsis_20nevadensis_20[genbank_20GCA_5F000696155.1_202014-06- 05] 31,662 sequences; 485,009,472 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq950 93.3 5e-14 >seq950 Length=836093 Score = 93.3 bits (102), Expect = 5e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 46385 ACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCG 46444 || ||||| | |||| ||||| |||||||| || || || || || || | || || Sbjct 302170 ACGAGATGAAGTGTAGATTCCTTCTGGATATTATAATCAGAGAGGGTTCGGCCATCCTCC 302229 Query 46445 AGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATG 46504 ||||||||||| || || |||| ||||||||||| | || | | |||||||| | Sbjct 302230 AGCTGCTTGCCAGCAAAGATCAGTCGCTGCTGGTCTGGTGGAATTCCTTCCTTGTCTTGG 302289 Query 46505 ATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTG 46564 ||||| || | || | | ||| || | |||||| || | || ||||| ||| Sbjct 302290 ATCTTGGCTTTCACATTCTCAATCGTATCAGATGCTTCCACTTCTAAAGTAATGGTCTTG 302349 Query 46565 CCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 || ||||| ||||| || || || ||||| Sbjct 302350 CCAGTCAGAGTTTTCACGAAAATCTGCAT 302378 Score = 89.7 bits (98), Expect = 6e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426 ||||| | | ||| | ||| || || | |||| ||| || |||||||| || || || Sbjct 297479 CCTCCCCGGAGACGAAGCACAAGGTGGAGTGTAGACTCTTTCTGGATATTATAATCTGAG 297538 Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486 || || || | || || ||||||||||| || || |||| ||||||||||| | || Sbjct 297539 AGGGTTCGGCCATCCTCCAGCTGCTTGCCAGCAAAGATCAGTCGCTGCTGGTCTGGTGGA 297598 Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 46546 | || || |||||| |||||| || | || | | || || | || || Sbjct 297599 ATGCCTTCTTTGTCCTGGATCTTGGCTTTCACGTTCTCAATTGTATCAGAAGCCTCTACT 297658 Query 46547 TCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 |||| || |||||||| || |||| ||||| ||||| || ||||| Sbjct 297659 TCCAGAGTAATGGTTTTTCCTGTCAAGGTTTTGACAAATATCTGCAT 297705 Score = 89.7 bits (98), Expect = 6e-13 Identities = 135/191 (71%), Gaps = 1/191 (1%) Strand=Plus/Plus Query 46404 CCTTT-TGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAAT 46462 ||||| ||||| |||||||| || | ||| || | || || ||||||||||| || || Sbjct 301960 CCTTTCTGGATGTTGTAGTCCGACAAAGTTCGGCCATCTTCCAGCTGCTTGCCAGCAAAG 302019 Query 46463 ATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTC 46522 |||| ||||||||||| | || | || |||||||| |||||| || | || Sbjct 302020 ATCAGTCGCTGCTGGTCTGGTGGAATGCCTTCCTTGTCTTGGATCTTGGCTTTCACATTC 302079 Query 46523 GCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACA 46582 | | ||| || | ||||| |||| || || |||||||| |||| ||||| || Sbjct 302080 TCAATCGTATCTGATGCCTCCACTTCCAAAGTAATCGTTTTGCCTGTCAAGGTTTTGACG 302139 Query 46583 AAGATTTGCAT 46593 || || ||||| Sbjct 302140 AATATCTGCAT 302150 Score = 87.8 bits (96), Expect = 2e-12 Identities = 105/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426 ||||| | | ||| | ||| || || | |||| ||| || ||||| |||||||| || Sbjct 298972 CCTCCCCGGAGACGAAGCACAAGGTGGAGTGTAGACTCTTTCTGGATGTTGTAGTCTGAC 299031 Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486 | ||| || | || || ||||||||||| || || |||| ||||||||||| | || Sbjct 299032 AAAGTTCGGCCATCCTCCAGCTGCTTGCCAGCAAAGATCAGTCGCTGCTGGTCTGGTGGA 299091 Query 46487 ACGCTCTCCTTGTCCATGATCTT 46509 | || ||||||||| |||||| Sbjct 299092 ATGCCTTCCTTGTCCTGGATCTT 299114 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 565014692772240