Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zootermopsis_20nevadensis_20[genbank_20GCA_5F000696155.1_202014-06- 05] 31,662 sequences; 485,009,472 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq513 123 2e-23 seq70 91.5 1e-13 seq950 84.2 2e-11 >seq513 Length=652068 Score = 123 bits (136), Expect = 2e-23 Identities = 161/223 (72%), Gaps = 0/223 (0%) Strand=Plus/Plus Query 132917 CCTCGTCCCTGGAAATGAGTTCGTTGCTGAAAGTCAAGCCGGGCATGAGGCCGCGTTTTT 132976 ||||||| | ||||| ||||| |||||||| || | |||||||| || || || || | Sbjct 206546 CCTCGTCTCGTGAAATAAGTTCATTGCTGAAGGTGAGACCGGGCATAAGTCCCCGCTTCT 206605 Query 132977 TGAGCCAAAATATGGCGGCGAAACTGCCCGAAAAGAAGACGCCCTCGACGGCCGCGAAAG 133036 | | ||| || || || || ||||| || || ||||||| || || || || || || | Sbjct 206606 TTAACCAGAAGATAGCAGCAAAACTTCCAGAGAAGAAGATACCTTCCACTGCAGCAAACG 206665 Query 133037 CCACCAGGCGCTCGCCGAACGTGGCTTCTTTGCTGGCGATCCAGCGCAGCGCCCATTCGG 133096 | |||| | ||| || ||||| || || | || ||||| | || ||||| || | Sbjct 206666 CAACCACTCTCTCACCAAACGTCGCAGTTTCGTGCGCTATCCACTGAAGGGCCCAATCTG 206725 Query 133097 CCTTTTCTTTGACGCACGGCATCGTTTCGATGGCGTTCAACAA 133139 |||| | ||| || ||||||||||| || | |||||| || || Sbjct 206726 CCTTCTTTTTCACACACGGCATCGTCTCAACGGCGTTAAATAA 206768 Score = 86.0 bits (94), Expect = 6e-12 Identities = 151/218 (69%), Gaps = 4/218 (2%) Strand=Plus/Plus Query 132704 TGCCGATCAGGTCGACGAGCAGCCTGTCGGCCACGAACTCGATGTATTGCGACAT--GGT 132761 ||| | | || ||||| ||||| | ||||||||| ||||||||||| ||| ||| ||| Sbjct 206239 TGCAGTTTAGTTCGACAAGCAGACGGTCGGCCACAAACTCGATGTACTGCTTCATAAGGT 206298 Query 132762 TTCGCAATTAAGTCCCAGCAGACGCACCGGCAGCGCTTCGGTGAGAAAGCGTTGCTCGAT 132821 | |||||| | || | || || |||| || || || | || ||||| || Sbjct 206299 T--GCAATTCATGCCAATCATGGCAACGGGCAAAGCCTCCGTCAAGAACTCCTGCTCTAT 206356 Query 132822 GGCGACCGCGTCGGTGACGATTTCCCTAACGCGCGCCGCGCTCGGCCGTTGCACCAAATG 132881 ||||| || || | | ||| || | || | | | ||||| |||||||| || Sbjct 206357 TGCGACAGCATCCCTTATGATGGCCGTCACTTCCTCTTCCGTCGGCTTCTGCACCAAGTG 206416 Query 132882 CTTGAACATCAAGCAAGCAAAGTCGCAATGCAAGCCCT 132919 ||| ||||||| |||||||||||| ||||| | |||| Sbjct 206417 CTTAAACATCAGGCAAGCAAAGTCACAATGTAGACCCT 206454 >seq70 Length=429657 Score = 91.5 bits (100), Expect = 1e-13 Identities = 149/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||| | || || || || ||||| || |||||||| || | || || || | | Sbjct 142350 ATGCAAGTCTTTGTGAAGACTCTCACTGGAAAAACCATTACTCTTGAAGTTGAACCATCT 142409 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| ||| ||| | ||| |||||| | ||||| || |||||||| | | ||| Sbjct 142410 GACACCGTTGAAAACTTGAAACGAAAAATTCAGGACAAGGAAGGAATTCCTCCTCATCAA 142469 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 || || | |||| || ||||| || |||| || | |||||| | || |||||| Sbjct 142470 CAACGTTTAATTTTTGCTGGCAAGCAATTGGAGGATGGCCGCACCTTATCAGATTACAAC 142529 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCG 38458 ||||| || ||| | || ||||| ||||| || || Sbjct 142530 ATCCATAAAGAATCAACCCTGCACTTGGTTCTTCG 142564 >seq950 Length=836093 Score = 84.2 bits (92), Expect = 2e-11 Identities = 136/192 (71%), Gaps = 3/192 (2%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| |||||||| ||||| | || |||||||| || || | || || ||||| | Sbjct 302150 ATGCAGATATTCGTCAAAACCTTGACAGGCAAAACGATTACTTTGGAAGTGGAGGCATCA 302091 Query 38304 GACA-GCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 || | | || || | | |||| || |||| ||||| || || ||||| | ||||| Sbjct 302090 GATACGATTGAGAATG-TGAAAGCCAAGATCCAAGACAAGGAAGGCATTCCACCAGACCA 302032 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||||| || || | || ||||| |||||||| || | || || | |||||||| Sbjct 302031 GCAGCGACTGATCTTTGCTGGCAAGCAGCTGGAAGATGGCCGAACTTTGTCGGACTACAA 301972 Query 38423 CATCCA-AAAGG 38433 |||||| ||||| Sbjct 301971 CATCCAGAAAGG 301960 Score = 82.4 bits (90), Expect = 8e-11 Identities = 93/125 (74%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 38322 AAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCG 38381 |||| || |||| |||||||| |||||||| | ||||| ||||| || || | || Sbjct 297855 AAAGCCAAGATCCAGGACAAAGAAGGAATTCCACCAGACCAGCAGCGACTGATCTTTGCT 297796 Query 38382 GGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACG 38441 |||||||||||||| || | || |||||| || || || ||||| |||||| | || Sbjct 297795 GGCAAACAGCTGGAGGATGGCCGAACCCTCTCAGATTATAATATCCAGAAGGAATCTACA 297736 Query 38442 CTGCA 38446 || || Sbjct 297735 CTTCA 297731 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499974844110080