Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zootermopsis_20nevadensis_20[genbank_20GCA_5F000696155.1_202014-06- 05] 31,662 sequences; 485,009,472 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq950 165 2e-35 seq623 149 1e-30 seq352 127 5e-24 seq583 120 7e-22 seq1183 111 3e-19 >seq950 Length=836093 Score = 165 bits (182), Expect = 2e-35 Identities = 162/209 (78%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 |||||||| || || |||||||| || ||||| ||||| | || |||| ||||| || Sbjct 297497 ACAAGGTGGAGTGTAGACTCTTTCTGGATATTATAATCTGAGAGGGTTCGGCCATCCTCC 297556 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 |||||||| || || ||||| ||||| || |||||||| ||||||||||||||||| || Sbjct 297557 AGCTGCTTGCCAGCAAAGATCAGTCGCTGCTGGTCTGGTGGAATGCCTTCTTTGTCCTGG 297616 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 || || || ||||||||||| || || ||| || ||||| || |||| || ||| Sbjct 297617 ATCTTGGCTTTCACGTTCTCAATTGTATCAGAAGCCTCTACTTCCAGAGTAATGGTTTTT 297676 Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCAT 195140 |||||||| ||||| || || | ||||| Sbjct 297677 CCTGTCAAGGTTTTGACAAATATCTGCAT 297705 Score = 140 bits (154), Expect = 7e-28 Identities = 145/190 (76%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 194951 CTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGCTTACCTGCGAAGA 195010 |||| || || ||||| || | | ||||| |||||||| |||||||| || || |||| Sbjct 301961 CTTTCTGGATGTTGTAGTCCGACAAAGTTCGGCCATCTTCCAGCTGCTTGCCAGCAAAGA 302020 Query 195011 TAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTTGACGTTCT 195070 | ||||| || |||||||| ||||||||||| |||||||| || || || || |||| Sbjct 302021 TCAGTCGCTGCTGGTCTGGTGGAATGCCTTCCTTGTCTTGGATCTTGGCTTTCACATTCT 302080 Query 195071 CAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCAAAGTTTTTACGA 195130 |||| || || || |||||||| | |||| ||| || |||||||| ||||| |||| Sbjct 302081 CAATCGTATCTGATGCCTCCACTTCCAAAGTAATCGTTTTGCCTGTCAAGGTTTTGACGA 302140 Query 195131 ACACTTGCAT 195140 | | ||||| Sbjct 302141 ATATCTGCAT 302150 Score = 118 bits (130), Expect = 2e-21 Identities = 112/143 (78%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 |||||||| || || |||||||| || || ||||| || | | ||||| ||||| || Sbjct 298990 ACAAGGTGGAGTGTAGACTCTTTCTGGATGTTGTAGTCTGACAAAGTTCGGCCATCCTCC 299049 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 |||||||| || || ||||| ||||| || |||||||| ||||||||||| ||||| || Sbjct 299050 AGCTGCTTGCCAGCAAAGATCAGTCGCTGCTGGTCTGGTGGAATGCCTTCCTTGTCCTGG 299109 Query 195052 ATTTTTTGCTTGACGTTCTCAAT 195074 || || || ||||||||||| Sbjct 299110 ATCTTGGCTTTCACGTTCTCAAT 299132 Score = 116 bits (128), Expect = 8e-21 Identities = 152/210 (72%), Gaps = 3/210 (1%) Strand=Plus/Plus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || || || || || || ||||| || | |||||||| || || | ||||| || Sbjct 300667 ACCAGATGGAGTGTTGATTCTTTCTGGTTGTTGTAATCC---AGTGTGCGTCCATCCTCC 300723 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 |||||||| || || ||||| ||||| ||||| || || ||||| ||||||||||| ||| Sbjct 300724 AGCTGCTTGCCAGCAAAGATCAGTCGCTGTTGATCAGGTGGAATTCCTTCTTTGTCCTGA 300783 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 || || || || |||||||| || || ||| || ||||| | || | ||||| Sbjct 300784 ATCTTGGCTTTAACATTCTCAATCGTATCAGAAGCCTCTACTTCCAATGTGATTGTCTTG 300843 Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCATT 195141 ||||||| ||| || || || | |||||| Sbjct 300844 CCTGTCAGAGTCTTAACAAAGATCTGCATT 300873 Score = 109 bits (120), Expect = 1e-18 Identities = 110/143 (77%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || |||||||| || || || || || ||||| ||||| | || |||| ||||| || Sbjct 297725 ACGAGGTGAAGTGTAGATTCCTTCTGGATATTATAATCTGAGAGGGTTCGGCCATCCTCC 297784 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 ||||| || || || ||||| ||||| || |||||||| ||||| ||||||||||| || Sbjct 297785 AGCTGTTTGCCAGCAAAGATCAGTCGCTGCTGGTCTGGTGGAATTCCTTCTTTGTCCTGG 297844 Query 195052 ATTTTTTGCTTGACGTTCTCAAT 195074 || || || ||||||||||| Sbjct 297845 ATCTTGGCTTTCACGTTCTCAAT 297867 >seq623 Length=111817 Score = 149 bits (164), Expect = 1e-30 Identities = 147/190 (77%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 194951 CTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGCTTACCTGCGAAGA 195010 |||| || |||||||| || | ||| || | |||||||| | |||||| ||||| || | Sbjct 110330 CTTTCTGTATATTGTAGTCAGAAAGTGTACGACCATCTTCCAACTGCTTTCCTGCAAAAA 110389 Query 195011 TAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTTGACGTTCT 195070 | | |||||||| || |||||||| ||||| ||||| ||||||||| || ||||| | Sbjct 110390 TTAAACGTTGTTGATCAGGAGGAATTCCTTCCTTGTCCTGAATTTTTGCTTTAACGTTTT 110449 Query 195071 CAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCAAAGTTTTTACGA 195130 |||||||||| || ||||||||||||| ||| || ||||| || | ||| || || | Sbjct 110450 CAATGGTGTCAGACGTTTCCACTTCAAGAATAATGGTTTTTCCAGTGAGAGTCTTCACAA 110509 Query 195131 ACACTTGCAT 195140 | | |||||| Sbjct 110510 AGATTTGCAT 110519 Score = 100 bits (110), Expect = 6e-16 Identities = 144/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 194938 TGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGC 194997 || || || || ||||| || || |||||||| | | || | ||||| || | ||| Sbjct 107672 TGCAGGGTTGATTCTTTCTGGATGTTGTAATCTGATAAGGTACGGCCATCCTCCAATTGC 107731 Query 194998 TTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTT 195057 || || || ||||||||||| || ||| | ||||| || ||||| ||||| || || ||| Sbjct 107732 TTGCCAGCAAAGATAAGTCGCTGCTGGCCAGGAGGGATACCTTCCTTGTCCTGGATCTTT 107791 Query 195058 TGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTC 195117 || |||||||||||||| || | || || || || || | ||||| |||||| Sbjct 107792 GCTTTCACGTTCTCAATGGTATCAGCTGGCTCTACCTCCAGAGTGATGGTCTTCCCTGTC 107851 Query 195118 AAAGTTTTTACGAACACTTGCAT 195140 | || || || || | ||||| Sbjct 107852 AGGGTCTTCACAAAAATCTGCAT 107874 >seq352 Length=269356 Score = 127 bits (140), Expect = 5e-24 Identities = 142/190 (75%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 194951 CTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGCTTACCTGCGAAGA 195010 |||| || |||||||| || | || || | |||||||| | |||||| ||||| || | Sbjct 29305 CTTTCTGTATATTGTAGTCAGAAATTGTACGACCATCTTCCAACTGCTTTCCTGCAAAAA 29364 Query 195011 TAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTTGACGTTCT 195070 | | |||||||| || || ||||| ||||| ||||| | | ||| | || |||| | Sbjct 29365 TTAAACGTTGTTGATCAGGGGGAATTCCTTCCTTGTCGTTGAGTTTGCGTTTCACGTCTT 29424 Query 195071 CAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCAAAGTTTTTACGA 195130 |||||||||| | ||||||||||||| ||||| || ||||| || | ||| || || | Sbjct 29425 CAATGGTGTCAAACGTTTCCACTTCAAGAGTAACGGTTTTTCCAGTGAGAGTCTTCACAA 29484 Query 195131 ACACTTGCAT 195140 | | |||||| Sbjct 29485 AGATTTGCAT 29494 >seq583 Length=527131 Score = 120 bits (132), Expect = 7e-22 Identities = 140/189 (74%), Gaps = 0/189 (0%) Strand=Plus/Minus Query 194953 TTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGCTTACCTGCGAAGATA 195012 || |||||||| ||||| | | || | |||||||| | ||||| || || ||||| Sbjct 233046 TTCTGAATATTATAATCCGACAACGTGCGACCATCTTCTAATTGCTTCCCAGCAAAGATC 232987 Query 195013 AGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCA 195072 | ||| |||||||| || || || |||||||| |||||||| || |||||| || || Sbjct 232986 AATCGCTGTTGGTCCGGTGGGATACCTTCTTTATCTTGAATCTTAGCCTTGACATTTTCT 232927 Query 195073 ATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCAAAGTTTTTACGAAC 195132 ||||| ||||| || ||||| ||||| | || || || || | ||||||||||| Sbjct 232926 ATGGTATCCGACGCCTCAACTTCGAGGGTTATAGTTTTACCCGTTAGGGTTTTTACGAAA 232867 Query 195133 ACTTGCATT 195141 | ||||||| Sbjct 232866 ATTTGCATT 232858 >seq1183 Length=31732 Score = 111 bits (122), Expect = 3e-19 Identities = 139/191 (73%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 194951 CTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGCTTACCTGCGAAGA 195010 |||| || |||||||| || | || || | |||||| | |||||| ||||| || Sbjct 17238 CTTTCTGTATATTGTAGTCAGAGAGTGTACGATCATCTTTCAACTGCTTTCCTGCAAAAT 17297 Query 195011 TAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTTGACGTTCT 195070 | | ||||||||| || | ||||| ||||| || || | | | ||| || ||||| | Sbjct 17298 TTAATCGTTGTTGATCAGAGGGAATTCCTTCCTTTTCCTCTAGATGTTGTTTCACGTTTT 17357 Query 195071 CAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCAAAGTTTTTACGA 195130 |||||||||| ||| ||| |||||||| ||| || ||||| || | |||||| || | Sbjct 17358 CAATGGTGTCTGAAGGTTCAACTTCAAGAGTACAGGTTTTTCCAGTGAGAGTTTTCACAA 17417 Query 195131 ACACTTGCATT 195141 | | ||||||| Sbjct 17418 AGATTTGCATT 17428 Score = 109 bits (120), Expect = 1e-18 Identities = 152/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 194928 CAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATC 194987 ||| || | ||| || ||||| ||||| || || |||||||| | | || | ||||| Sbjct 15667 CAATACCAAGTGGAGGGTGGATTCTTTCTGGATGTTGTAATCTGATAAGGTGCGGCCATC 15726 Query 194988 TTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTC 195047 ||| | ||||| || || ||||||||||| || || || || || || ||||| ||||| Sbjct 15727 TTCCAATTGCTTGCCAGCAAAGATAAGTCGCTGCTGCTCAGGGGGGATACCTTCCTTGTC 15786 Query 195048 TTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGT 195107 || | |||| ||| | ||||||||||| || | || || || || || | || Sbjct 15787 CTGCAGCTTTTTCTTTAGATTCTCAATGGTATCAGCTGGCTCTACCTCCAGAGTGATGGT 15846 Query 195108 CTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 ||| ||||||| || || ||||| | ||||| Sbjct 15847 CTTCCCTGTCAGGGTCTTCACGAAAATCTGCAT 15879 Score = 91.5 bits (100), Expect = 3e-13 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 194931 AACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTC 194990 ||| | ||| || || || |||| || || |||||||| | | || | |||||||| Sbjct 15442 AACCAAGTGCAGGGTTGATCCTTTCTGGATGTTGTAATCTGATAAGGTGCGGCCATCTTC 15501 Query 194991 GAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTG 195050 | ||||| || || || |||||||| || || || || || || ||||| ||||| || Sbjct 15502 CAATTGCTTGCCAGCAAACATAAGTCGCTGCTGCTCAGGGGGGATACCTTCCTTGTCCTG 15561 Query 195051 AATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTT 195110 | |||| ||| | ||||||||||| || | || || || || || | ||||| Sbjct 15562 CAGCTTTTTCTTTAGATTCTCAATGGTATCAGCTGGCTCTACCTCCAGAGTGATGGTCTT 15621 Query 195111 TCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 ||||||| || || || || | ||||| Sbjct 15622 CCCTGTCAGGGTCTTCACAAAAATCTGCAT 15651 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1109031517292754