Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zootermopsis_20nevadensis_20[genbank_20GCA_5F000696155.1_202014-06- 05] 31,662 sequences; 485,009,472 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq950 102 5e-17 seq623 100 2e-16 seq352 100 2e-16 seq70 86.0 4e-12 seq1183 82.4 5e-11 >seq950 Length=836093 Score = 102 bits (112), Expect = 5e-17 Identities = 137/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 |||||||| || ||||| || || ||| |||| |||| |||||||| || || ||||| Sbjct 297515 TCTTTCTGGATATTATAATCTGAGAGGGTTCGGCCATCCTCCAGCTGCTTGCCAGCAAAG 297574 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || ||||| ||||||||| | || | || || ||||| ||||| ||| ||| Sbjct 297575 ATCAGTCGCTGCTGGTCTGGTGGAATGCCTTCTTTGTCCTGGATCTTGGCTTTCACGTTC 297634 Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970 | || | ||| ||||| || || | || ||||||||||| || | || || ||| Sbjct 297635 TCAATTGTATCAGAAGCCTCTACTTCCAGAGTAATGGTTTTTCCTGTCAAGGTTTTGACA 297694 Query 34971 AAGATCTGCAT 34981 || |||||||| Sbjct 297695 AATATCTGCAT 297705 Score = 86.0 bits (94), Expect = 4e-12 Identities = 137/194 (71%), Gaps = 7/194 (4%) Strand=Plus/Plus Query 34790 TTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAA 34849 ||||||||| |||| || ||| || | ||| |||| |||||||| || || ||||| Sbjct 300684 TTCTTTCTGGTTGTTGTAATCC---AGTGTGCGTCCATCCTCCAGCTGCTTGCCAGCAAA 300740 Query 34850 TATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGA 34909 || ||||| || || || | || | || || ||||| |||||| ||| || | Sbjct 300741 GATCAGTCGCTGTTGATCAGGTGGAATTCCTTCTTTGTCCTGAATCTTGGCTTTAAC--A 300798 Query 34910 TGCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTC 34967 | || |||| ||| ||||| || || | || || || || || || |||||||| Sbjct 300799 TTCTCAATCGTATCAGAAGCCTCTACTTCCAATGTGATTGTCTTGCCTGTCAGAGTCTTA 300858 Query 34968 ACAAAGATCTGCAT 34981 |||||||||||||| Sbjct 300859 ACAAAGATCTGCAT 300872 Score = 84.2 bits (92), Expect = 1e-11 Identities = 85/111 (77%), Gaps = 0/111 (0%) Strand=Plus/Plus Query 34778 GTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTG 34837 ||||| ||| ||| ||||| || ||||| || || ||| |||| |||| |||||||| Sbjct 297730 GTGAAGTGTAGATTCCTTCTGGATATTATAATCTGAGAGGGTTCGGCCATCCTCCAGCTG 297789 Query 34838 TTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34888 ||| || ||||| || ||||| ||||||||| | || | || || ||||| Sbjct 297790 TTTGCCAGCAAAGATCAGTCGCTGCTGGTCTGGTGGAATTCCTTCTTTGTC 297840 >seq623 Length=111817 Score = 100 bits (110), Expect = 2e-16 Identities = 136/190 (72%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 34792 CTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATA 34851 ||||||| || || ||||| ||||| | || |||| |||| ||| ||||| ||||| | Sbjct 110330 CTTTCTGTATATTGTAGTCAGAAAGTGTACGACCATCTTCCAACTGCTTTCCTGCAAAAA 110389 Query 34852 TTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATG 34911 ||| ||||| || || | || | || |||||||| ||| || ||| ||| | Sbjct 110390 TTAAACGTTGTTGATCAGGAGGAATTCCTTCCTTGTCCTGAATTTTTGCTTTAACGTTTT 110449 Query 34912 CTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAA 34971 | || | ||| | || || || | | ||||||||||| |||||||||||||||| Sbjct 110450 CAATGGTGTCAGACGTTTCCACTTCAAGAATAATGGTTTTTCCAGTGAGAGTCTTCACAA 110509 Query 34972 AGATCTGCAT 34981 |||| ||||| Sbjct 110510 AGATTTGCAT 110519 Score = 86.0 bits (94), Expect = 4e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 34772 AACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATC 34831 |||||| || | || ||||||||| ||||| || || || | | | || |||| || Sbjct 107665 AACCAAATGCAGGGTTGATTCTTTCTGGATGTTGTAATCTGATAAGGTACGGCCATCCTC 107724 Query 34832 CAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCT 34891 || || || || ||||| || ||||| |||||| | | || | || |||||||| Sbjct 107725 CAATTGCTTGCCAGCAAAGATAAGTCGCTGCTGGCCAGGAGGGATACCTTCCTTGTCCTG 107784 Query 34892 AATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTT 34951 ||||| ||| ||| | || | ||| | | ||| || || | || ||||| || Sbjct 107785 GATCTTTGCTTTCACGTTCTCAATGGTATCAGCTGGCTCTACCTCCAGAGTGATGGTCTT 107844 Query 34952 TCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 || || || ||||||||||| |||||||| Sbjct 107845 CCCTGTCAGGGTCTTCACAAAAATCTGCAT 107874 >seq352 Length=269356 Score = 100 bits (110), Expect = 2e-16 Identities = 136/190 (72%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 34792 CTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATA 34851 ||||||| || || ||||| |||| | || |||| |||| ||| ||||| ||||| | Sbjct 29305 CTTTCTGTATATTGTAGTCAGAAATTGTACGACCATCTTCCAACTGCTTTCCTGCAAAAA 29364 Query 34852 TTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATG 34911 ||| ||||| || || | || | || ||||||||| | | || |||| ||| | Sbjct 29365 TTAAACGTTGTTGATCAGGGGGAATTCCTTCCTTGTCGTTGAGTTTGCGTTTCACGTCTT 29424 Query 34912 CTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAA 34971 | || | ||| | || || || | || | ||||||||| |||||||||||||||| Sbjct 29425 CAATGGTGTCAAACGTTTCCACTTCAAGAGTAACGGTTTTTCCAGTGAGAGTCTTCACAA 29484 Query 34972 AGATCTGCAT 34981 |||| ||||| Sbjct 29485 AGATTTGCAT 29494 >seq70 Length=429657 Score = 86.0 bits (94), Expect = 4e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 34772 AACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATC 34831 ||||||||| | || |||||| || ||||| || || || | | | || |||| || Sbjct 142559 AACCAAGTGCAGGGTTGATTCTTTATGGATGTTGTAATCTGATAAGGTGCGGCCATCCTC 142500 Query 34832 CAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCT 34891 || || || || ||||| |||| ||||| || | | || | || |||||||| Sbjct 142499 CAATTGCTTGCCAGCAAAAATTAAACGTTGTTGATGAGGAGGAATTCCTTCCTTGTCCTG 142440 Query 34892 AATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTT 34951 ||| || |||| | | | | | | ||| | ||||| || | || |||||||| Sbjct 142439 AATTTTTCGTTTCAAGTTTTCAACGGTGTCAGATGGTTCAACTTCAAGAGTAATGGTTTT 142380 Query 34952 TCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 ||| ||||||||||||||||||| ||||| Sbjct 142379 TCCAGTGAGAGTCTTCACAAAGACTTGCAT 142350 >seq1183 Length=31732 Score = 82.4 bits (90), Expect = 5e-11 Identities = 147/213 (69%), Gaps = 4/213 (2%) Strand=Plus/Plus Query 34772 AACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATC 34831 ||||||||| | || | ||||||| ||||| || || || | | | || |||| || Sbjct 15442 AACCAAGTGCAGGGTTGATCCTTTCTGGATGTTGTAATCTGATAAGGTGCGGCCATCTTC 15501 Query 34832 CAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCT 34891 || || || || ||||| || ||||| ||||| || | || | || |||||||| Sbjct 15502 CAATTGCTTGCCAGCAAACATAAGTCGCTGCTGCTCAGGGGGGATACCTTCCTTGTCCTG 15561 Query 34892 AATCTTCTGTTTGACGGATGCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTT 34949 | ||| | || | ||| || || | ||| | | ||| || || | || ||||| Sbjct 15562 CAGCTTTTTCTTTA--GATTCTCAATGGTATCAGCTGGCTCTACCTCCAGAGTGATGGTC 15619 Query 34950 TTTCCCGTGAGAGTCTTCACAAAGATCTGCATA 34982 || || || || ||||||||||| ||||||||| Sbjct 15620 TTCCCTGTCAGGGTCTTCACAAAAATCTGCATA 15652 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 324508330183536