Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zootermopsis_20nevadensis_20[genbank_20GCA_5F000696155.1_202014-06- 05] 31,662 sequences; 485,009,472 total letters Query= NC_018875.1 Length=119082 Score E Sequences producing significant alignments: (Bits) Value seq950 118 8e-22 seq623 95.1 9e-15 seq1183 91.5 1e-13 seq352 91.5 1e-13 >seq950 Length=836093 Score = 118 bits (130), Expect = 8e-22 Identities = 140/190 (74%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 48577 CTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATA 48636 |||| || || ||||| || || | | |||| | || |||| |||||| || ||||| | Sbjct 301961 CTTTCTGGATGTTGTAGTCCGACAAAGTTCGGCCATCTTCCAGCTGCTTGCCAGCAAAGA 302020 Query 48637 TCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAAC 48696 |||||||||| || || | |||| ||| |||||||| ||||| ||| ||| Sbjct 302021 TCAGTCGCTGCTGGTCTGGTGGAATGCCTTCCTTGTCTTGGATCTTGGCTTTCACATTCT 302080 Query 48697 CCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAA 48756 | | | ||||| |||||||| |||| ||||||||||| || ||||| ||||| || | Sbjct 302081 CAATCGTATCTGATGCCTCCACTTCCAAAGTAATCGTTTTGCCTGTCAAGGTTTTGACGA 302140 Query 48757 AAATCTGCAT 48766 | |||||||| Sbjct 302141 ATATCTGCAT 302150 Score = 113 bits (124), Expect = 3e-20 Identities = 140/192 (73%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 48575 CTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAA 48634 |||||| || ||||| ||||| || || |||| | || |||| |||||| || ||||| Sbjct 297514 CTCTTTCTGGATATTATAATCTGAGAGGGTTCGGCCATCCTCCAGCTGCTTGCCAGCAAA 297573 Query 48635 TATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGA 48694 ||||||||||| || || | |||| ||| || ||||| ||||| ||| || Sbjct 297574 GATCAGTCGCTGCTGGTCTGGTGGAATGCCTTCTTTGTCCTGGATCTTGGCTTTCACGTT 297633 Query 48695 ACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTAC 48754 | | | || || ||||| || |||| ||||| |||||||| ||||| ||||| || Sbjct 297634 CTCAATTGTATCAGAAGCCTCTACTTCCAGAGTAATGGTTTTTCCTGTCAAGGTTTTGAC 297693 Query 48755 AAAAATCTGCAT 48766 ||| |||||||| Sbjct 297694 AAATATCTGCAT 297705 Score = 102 bits (112), Expect = 6e-17 Identities = 137/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 48576 TCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAAT 48635 || || || ||||| |||||||| || |||| | || |||| |||||| || ||||| Sbjct 302188 TCCTTCTGGATATTATAATCAGAGAGGGTTCGGCCATCCTCCAGCTGCTTGCCAGCAAAG 302247 Query 48636 ATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAA 48695 ||||||||||| || || | |||| || |||||||| ||||| ||| ||| Sbjct 302248 ATCAGTCGCTGCTGGTCTGGTGGAATTCCTTCCTTGTCTTGGATCTTGGCTTTCACATTC 302307 Query 48696 CCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACA 48755 | | | || || || ||||| || | ||||| || || || |||| |||||| || Sbjct 302308 TCAATCGTATCAGATGCTTCCACTTCTAAAGTAATGGTCTTGCCAGTCAGAGTTTTCACG 302367 Query 48756 AAAATCTGCAT 48766 ||||||||||| Sbjct 302368 AAAATCTGCAT 302378 Score = 87.8 bits (96), Expect = 1e-12 Identities = 145/209 (69%), Gaps = 3/209 (1%) Strand=Plus/Plus Query 48558 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCC 48617 |||| ||| || || ||||| || | |||||||| || | || | || ||| Sbjct 300667 ACCAGATGGAGTGTTGATTCTTTCTGGTTGTTGTAATCC---AGTGTGCGTCCATCCTCC 300723 Query 48618 AACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTA 48677 | |||||| || ||||| ||||||||||||||||| | |||| || || ||||| | Sbjct 300724 AGCTGCTTGCCAGCAAAGATCAGTCGCTGTTGATCAGGTGGAATTCCTTCTTTGTCCTGA 300783 Query 48678 ATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTT 48737 ||||| ||| ||| | | | || || ||||| || |||| || || || || Sbjct 300784 ATCTTGGCTTTAACATTCTCAATCGTATCAGAAGCCTCTACTTCCAATGTGATTGTCTTG 300843 Query 48738 CCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || |||| ||| || ||||| |||||||| Sbjct 300844 CCTGTCAGAGTCTTAACAAAGATCTGCAT 300872 >seq623 Length=111817 Score = 95.1 bits (104), Expect = 9e-15 Identities = 138/195 (71%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 48577 CTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATA 48636 |||| || |||||||| ||||| || | ||| | || ||||||||||| || ||||| | Sbjct 110330 CTTTCTGTATATTGTAGTCAGAAAGTGTACGACCATCTTCCAACTGCTTTCCTGCAAAAA 110389 Query 48637 TCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAAC 48696 | | || |||||||| | |||| || |||||||| ||| ||| ||| || Sbjct 110390 TTAAACGTTGTTGATCAGGAGGAATTCCTTCCTTGTCCTGAATTTTTGCTTTAACGTTTT 110449 Query 48697 CCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAA 48756 | | | || |||| ||||| || | |||| |||||||| || | ||| || |||| Sbjct 110450 CAATGGTGTCAGACGTTTCCACTTCAAGAATAATGGTTTTTCCAGTGAGAGTCTTCACAA 110509 Query 48757 AAATCTGCATCGTGT 48771 | || |||||| ||| Sbjct 110510 AGATTTGCATCCTGT 110524 >seq1183 Length=31732 Score = 91.5 bits (100), Expect = 1e-13 Identities = 151/218 (69%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || ||||| ||||| || || ||| ||||| || || |||||||| |||| | || Sbjct 15662 AGACGCAATACCAAGTGGAGGGTGGATTCTTTCTGGATGTTGTAATCTGATAAGGTGCGG 15721 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 | || ||||| ||||| || ||||| || |||||||| || || | ||| | || ||| Sbjct 15722 CCATCTTCCAATTGCTTGCCAGCAAAGATAAGTCGCTGCTGCTCAGGGGGGATACCTTCC 15781 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 ||||| | ||||| |||| | | | | || | | ||| ||||||| || Sbjct 15782 TTGTCCTGCAGCTTTTTCTTTAGATTCTCAATGGTATCAGCTGGCTCTACCTCCAGAGTG 15841 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || || || || |||| || || || ||||||||||| Sbjct 15842 ATGGTCTTCCCTGTCAGGGTCTTCACGAAAATCTGCAT 15879 Score = 84.2 bits (92), Expect = 2e-11 Identities = 146/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 48558 ACCAAATGTAGCGT-GCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTC 48616 ||||| || || || | || |||| || || |||||||| |||| | || | || || Sbjct 15443 ACCAAGTGCAGGGTTGATC-CTTTCTGGATGTTGTAATCTGATAAGGTGCGGCCATCTTC 15501 Query 48617 CAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCT 48676 ||| ||||| || ||||| || |||||||| || || | ||| | || |||||||| Sbjct 15502 CAATTGCTTGCCAGCAAACATAAGTCGCTGCTGCTCAGGGGGGATACCTTCCTTGTCCTG 15561 Query 48677 AATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTT 48736 | ||||| |||| | | | | || | | ||| ||||||| || || || || Sbjct 15562 CAGCTTTTTCTTTAGATTCTCAATGGTATCAGCTGGCTCTACCTCCAGAGTGATGGTCTT 15621 Query 48737 TCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || |||| || || |||||||||||||| Sbjct 15622 CCCTGTCAGGGTCTTCACAAAAATCTGCAT 15651 >seq352 Length=269356 Score = 91.5 bits (100), Expect = 1e-13 Identities = 137/195 (70%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 48577 CTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATA 48636 |||| || |||||||| ||||| | | ||| | || ||||||||||| || ||||| | Sbjct 29305 CTTTCTGTATATTGTAGTCAGAAATTGTACGACCATCTTCCAACTGCTTTCCTGCAAAAA 29364 Query 48637 TCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAAC 48696 | | || |||||||| | ||||| || ||||||||| | | || |||| || Sbjct 29365 TTAAACGTTGTTGATCAGGGGGAATTCCTTCCTTGTCGTTGAGTTTGCGTTTCACGTCTT 29424 Query 48697 CCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAA 48756 | | | || ||| ||||| || | |||| |||||||| || | ||| || |||| Sbjct 29425 CAATGGTGTCAAACGTTTCCACTTCAAGAGTAACGGTTTTTCCAGTGAGAGTCTTCACAA 29484 Query 48757 AAATCTGCATCGTGT 48771 | || |||||| ||| Sbjct 29485 AGATTTGCATCCTGT 29499 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380790603560826