Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zootermopsis_20nevadensis_20[genbank_20GCA_5F000696155.1_202014-06- 05] 31,662 sequences; 485,009,472 total letters Query= NC_021246.1 Length=281182 Score E Sequences producing significant alignments: (Bits) Value seq583 156 8e-33 seq70 118 2e-21 seq623 116 7e-21 seq950 104 4e-17 seq352 95.1 2e-14 >seq583 Length=527131 Score = 156 bits (172), Expect = 8e-33 Identities = 145/184 (79%), Gaps = 0/184 (0%) Strand=Plus/Minus Query 193178 AATATTATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCT 193237 ||||||||| || || ||||| | | ||| |||||||| || || ||||| || |||| Sbjct 233041 AATATTATAATCCGACAACGTGCGACCATCTTCTAATTGCTTCCCAGCAAAGATCAATCG 232982 Query 193238 CTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGT 193297 |||||| || || || || |||||||||||||| || || | || | |||| || || Sbjct 232981 CTGTTGGTCCGGTGGGATACCTTCTTTATCTTGAATCTTAGCCTTGACATTTTCTATGGT 232922 Query 193298 ATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTG 193357 ||| || | ||||||||| || |||||||||||||| ||||| |||||||| || ||||| Sbjct 232921 ATCCGACGCCTCAACTTCGAGGGTTATAGTTTTACCCGTTAGGGTTTTTACGAAAATTTG 232862 Query 193358 CATT 193361 |||| Sbjct 232861 CATT 232858 >seq70 Length=429657 Score = 118 bits (130), Expect = 2e-21 Identities = 163/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 193133 ACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGA 193192 |||||||| | ||||| |||| |||| || | |||||| || || || || || Sbjct 142577 ACCACCTCGGAGGCGAAGAACCAAGTGCAGGGTTGATTCTTTATGGATGTTGTAATCTGA 142518 Query 193193 TAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGG 193252 ||| || | ||| || ||||| || || ||||||||||| | ||||||| |||||| Sbjct 142517 TAAGGTGCGGCCATCCTCCAATTGCTTGCCAGCAAAAATTAAACGTTGTTGATGAGGAGG 142458 Query 193253 TATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAAC 193312 |||||||| || || || ||||| ||| | ||| || || || || | ||||| Sbjct 142457 AATTCCTTCCTTGTCCTGAATTTTTCGTTTCAAGTTTTCAACGGTGTCAGATGGTTCAAC 142398 Query 193313 TTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 ||| ||||| || ||||| || || || || || ||||| | |||||| Sbjct 142397 TTCAAGAGTAATGGTTTTTCCAGTGAGAGTCTTCACAAAGACTTGCAT 142350 >seq623 Length=111817 Score = 116 bits (128), Expect = 7e-21 Identities = 135/182 (74%), Gaps = 0/182 (0%) Strand=Plus/Plus Query 193179 ATATTATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTC 193238 ||||| ||||| || | || | | ||| || || || ||||| ||||||||||| | Sbjct 110338 ATATTGTAGTCAGAAAGTGTACGACCATCTTCCAACTGCTTTCCTGCAAAAATTAAACGT 110397 Query 193239 TGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTA 193298 |||||||||||||| |||||||| || || || ||||| | ||| | ||| ||| || Sbjct 110398 TGTTGATCAGGAGGAATTCCTTCCTTGTCCTGAATTTTTGCTTTAACGTTTTCAATGGTG 110457 Query 193299 TCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGC 193358 || || | || ||||| ||| | || ||||| || || || || || ||||| |||||| Sbjct 110458 TCAGACGTTTCCACTTCAAGAATAATGGTTTTTCCAGTGAGAGTCTTCACAAAGATTTGC 110517 Query 193359 AT 193360 || Sbjct 110518 AT 110519 >seq950 Length=836093 Score = 104 bits (114), Expect = 4e-17 Identities = 111/147 (76%), Gaps = 0/147 (0%) Strand=Plus/Plus Query 193215 TGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATT 193274 || || || ||||| || | || |||||||||||| || ||||||||||| || || || Sbjct 300727 TGCTTGCCAGCAAAGATCAGTCGCTGTTGATCAGGTGGAATTCCTTCTTTGTCCTGAATC 300786 Query 193275 TTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCT 193334 |||| ||| | ||| ||| ||||| |||| ||| ||||| | || || || || ||| Sbjct 300787 TTGGCTTTAACATTCTCAATCGTATCAGAAGCCTCTACTTCCAATGTGATTGTCTTGCCT 300846 Query 193335 GTTAGCGTTTTTACAAATATTTGCATT 193361 || || || || ||||| || |||||| Sbjct 300847 GTCAGAGTCTTAACAAAGATCTGCATT 300873 >seq352 Length=269356 Score = 95.1 bits (104), Expect = 2e-14 Identities = 130/182 (71%), Gaps = 0/182 (0%) Strand=Plus/Plus Query 193179 ATATTATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTC 193238 ||||| ||||| || | || | | ||| || || || ||||| ||||||||||| | Sbjct 29313 ATATTGTAGTCAGAAATTGTACGACCATCTTCCAACTGCTTTCCTGCAAAAATTAAACGT 29372 Query 193239 TGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTA 193298 ||||||||||| || |||||||| || || | | |||| ||| | | | ||| || Sbjct 29373 TGTTGATCAGGGGGAATTCCTTCCTTGTCGTTGAGTTTGCGTTTCACGTCTTCAATGGTG 29432 Query 193299 TCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGC 193358 || | | || ||||| ||||| | ||||| || || || || || ||||| |||||| Sbjct 29433 TCAAACGTTTCCACTTCAAGAGTAACGGTTTTTCCAGTGAGAGTCTTCACAAAGATTTGC 29492 Query 193359 AT 193360 || Sbjct 29493 AT 29494 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 899298339279840