Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zootermopsis_20nevadensis_20[genbank_20GCA_5F000696155.1_202014-06- 05] 31,662 sequences; 485,009,472 total letters Query= NC_021247.1 Length=228750 Score E Sequences producing significant alignments: (Bits) Value seq950 136 6e-27 seq513 102 1e-16 seq623 96.9 5e-15 seq583 96.9 5e-15 seq70 95.1 2e-14 >seq950 Length=836093 Score = 136 bits (150), Expect = 6e-27 Identities = 152/203 (75%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| |||||| | ||||| ||||| |||||||| ||||| | ||||| || | |||| Sbjct 297705 ATGCAGATATTTGTCAAAACCTTGACAGGAAAAACCATTACTCTGGAAGTAGAGGCTTCT 297646 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| ||| ||||||||| || || || || ||||||||||| || ||||| || Sbjct 297645 GATACAATTGAGAACGTGAAAGCCAAGATCCAGGACAAAGAAGGCATTCCACCAGACCAG 297586 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || || |||| | ||| || |||||||| || ||| | |||| | |||||||||||| Sbjct 297585 CAGCGACTGATCTTTGCTGGCAAGCAGCTGGAGGATGGCCGAACCCTCTCAGATTATAAT 297526 Query 156003 ATATCCAAAGAGGCGACGCTTCA 156025 || |||||| | || || || Sbjct 297525 ATCCAGAAAGAGTCTACACTCCA 297503 Score = 113 bits (124), Expect = 7e-20 Identities = 134/182 (74%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || || | ||||| ||||||| || || ||||| |||||||| |||| ||| Sbjct 302378 ATGCAGATTTTCGTGAAAACTCTGACTGGCAAGACCATTACTTTAGAAGTGGAAGCATCT 302319 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| ||| || |||||| || || ||||| || ||||| || || ||||| || Sbjct 302318 GATACGATTGAGAATGTGAAAGCCAAGATCCAAGACAAGGAAGGAATTCCACCAGACCAG 302259 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || || |||| | ||| || |||||||| || ||| | |||| | || ||||||||| Sbjct 302258 CAGCGACTGATCTTTGCTGGCAAGCAGCTGGAGGATGGCCGAACCCTCTCTGATTATAAT 302199 Query 156003 AT 156004 || Sbjct 302198 AT 302197 >seq513 Length=652068 Score = 102 bits (112), Expect = 1e-16 Identities = 150/211 (71%), Gaps = 6/211 (3%) Strand=Plus/Plus Query 18426 TTATATAAGTGTCGATTAACAAAGAATACATTTCAGAATGTATGCTTTCCATAGCTATCT 18485 |||| || || || || ||||| ||||||||| ||||| | ||||||| ||||||| Sbjct 207372 TTATGTAGGTATCAATCAACAAGCTATACATTTCTGAATGGACATTTTCCATCGCTATCT 207431 Query 18486 GAAAACTATAAAACGATCTAGCCTCGGGATATTGAATCTC---GCTATAAAATCTTTCTA 18542 |||| | ||| || |||| || || | ||| | || ||| ||||| |||| Sbjct 207432 GAAAGCCATAGAAGCATCTTGCTTCTGTTACTTGTACTTCCTGGCTG---AATCTCTCTA 207488 Query 18543 CCAAATTCTCATTAACTATACCGTCAGCAGATGCGAAAAATGCCAAAACATATTTAATGA 18602 |||||||||||||||| || || || | || ||| |||||||| | |||| || | Sbjct 207489 CCAAATTCTCATTAACAATTCCATCTGAAGCTGCAAAAAATGCTAGTACATGGGAGATAA 207548 Query 18603 AATGTTTTTCATTATCCTTGAGATTGTTCCA 18633 ||||| |||||| || | || ||||||| Sbjct 207549 AATGTCTTTCATCTTCTGTCAGCATGTTCCA 207579 >seq623 Length=111817 Score = 96.9 bits (106), Expect = 5e-15 Identities = 115/156 (74%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| ||| | || || | ||||||||||| |||| | ||||| ||| ||| Sbjct 110519 ATGCAAATCTTTGTGAAGACTCTCACTGGAAAAACCATTATTCTTGAAGTGGAAACGTCT 110460 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | ||| |||||| ||| ||||| || || || ||||| || ||||| || ||| Sbjct 110459 GACACCATTGAAAACGTTAAAGCAAAAATTCAGGACAAGGAAGGAATTCCTCCTGATCAA 110400 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGAT 155978 ||| | || |||| ||| || |||||| | |||||| Sbjct 110399 CAACGTTTAATTTTTGCAGGAAAGCAGTTGGAAGAT 110364 >seq583 Length=527131 Score = 96.9 bits (106), Expect = 5e-15 Identities = 131/183 (72%), Gaps = 0/183 (0%) Strand=Plus/Plus Query 155822 AATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTC 155881 ||||||||| || | ||||| | || || |||||||| || | ||||| || | || Sbjct 232858 AATGCAAATTTTCGTAAAAACCCTAACGGGTAAAACTATAACCCTCGAAGTTGAGGCGTC 232917 Query 155882 TGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACA 155941 |||| || ||| || || ||| || |||||||||||||| || || || || || Sbjct 232918 GGATACCATAGAAAATGTCAAGGCTAAGATTCAAGATAAAGAAGGTATCCCACCGGACCA 232977 Query 155942 ACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAA 156001 ||| ||||||| | ||| || ||||| | |||||| | || || || |||||||| Sbjct 232978 ACAGCGATTGATCTTTGCTGGGAAGCAATTAGAAGATGGTCGCACGTTGTCGGATTATAA 233037 Query 156002 TAT 156004 ||| Sbjct 233038 TAT 233040 >seq70 Length=429657 Score = 95.1 bits (104), Expect = 2e-14 Identities = 130/182 (71%), Gaps = 0/182 (0%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||| | ||| | || || | ||||||||||| ||||| | ||||| ||| ||| Sbjct 142350 ATGCAAGTCTTTGTGAAGACTCTCACTGGAAAAACCATTACTCTTGAAGTTGAACCATCT 142409 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | || |||| ||||| ||||| || || || ||||| || ||||| | ||| Sbjct 142410 GACACCGTTGAAAACTTGAAACGAAAAATTCAGGACAAGGAAGGAATTCCTCCTCATCAA 142469 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 ||| | || |||| ||| || ||||| | || ||| | | || ||||||||||| || Sbjct 142470 CAACGTTTAATTTTTGCTGGCAAGCAATTGGAGGATGGCCGCACCTTATCAGATTACAAC 142529 Query 156003 AT 156004 || Sbjct 142530 AT 142531 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 731582343359200