Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zootermopsis_20nevadensis_20[genbank_20GCA_5F000696155.1_202014-06- 05] 31,662 sequences; 485,009,472 total letters Query= NC_021248.1 Length=307691 Score E Sequences producing significant alignments: (Bits) Value seq583 136 8e-27 seq950 134 3e-26 seq70 114 3e-20 seq1183 113 9e-20 seq623 113 9e-20 seq352 95.1 2e-14 seq513 93.3 8e-14 >seq583 Length=527131 Score = 136 bits (150), Expect = 8e-27 Identities = 140/183 (77%), Gaps = 0/183 (0%) Strand=Plus/Minus Query 192355 ATATTATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTC 192414 ||||||||||| || || || || |||| || ||||| || ||||||||||| |||| | Sbjct 233040 ATATTATAATCCGACAACGTGCGACCATCTTCTAATTGCTTCCCAGCAAAGATCAATCGC 232981 Query 192415 TGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAA 192474 ||||| || ||||| || |||||||||||||| || ||| || ||||| ||| | | Sbjct 232980 TGTTGGTCCGGTGGGATACCTTCTTTATCTTGAATCTTAGCCTTGACATTTTCTATGGTA 232921 Query 192475 TCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGC 192534 || |||| || ||||| || || || |||||||| |||| ||||| | || || ||| Sbjct 232920 TCCGACGCCTCAACTTCGAGGGTTATAGTTTTACCCGTTAGGGTTTTTACGAAAATTTGC 232861 Query 192535 ATT 192537 ||| Sbjct 232860 ATT 232858 >seq950 Length=836093 Score = 134 bits (148), Expect = 3e-26 Identities = 148/197 (75%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 192340 GTAGCCTCTTTAGAGATATTATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCA 192399 |||| |||||| |||||||||||| || | ||||| |||| |||| || || ||| Sbjct 297509 GTAGACTCTTTCTGGATATTATAATCTGAGAGGGTTCGGCCATCCTCCAGCTGCTTGCCA 297568 Query 192400 GCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTT 192459 |||||||| | || ||| || || ||||| || |||||||| || || || || ||| Sbjct 297569 GCAAAGATCAGTCGCTGCTGGTCTGGTGGAATGCCTTCTTTGTCCTGGATCTTGGCTTTC 297628 Query 192460 ACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTT 192519 || || || | ||| || | |||||||| |||||||||||||| || || || ||| Sbjct 297629 ACGTTCTCAATTGTATCAGAAGCCTCTACTTCCAGAGTAATGGTTTTTCCTGTCAAGGTT 297688 Query 192520 TTAATAAATATCTGCAT 192536 || | |||||||||||| Sbjct 297689 TTGACAAATATCTGCAT 297705 Score = 131 bits (144), Expect = 3e-25 Identities = 167/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 || ||||||| ||| | | || | ||| | |||| || || ||||||||||||| Sbjct 302149 ATGCCACCTCGAAGCCTGAGGACGAGATGAAGTGTAGATTCCTTCTGGATATTATAATCA 302208 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 || | ||||| |||| |||| || || ||||||||||| | || ||| || || ||| Sbjct 302209 GAGAGGGTTCGGCCATCCTCCAGCTGCTTGCCAGCAAAGATCAGTCGCTGCTGGTCTGGT 302268 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || |||||||| || ||||| || || ||| ||||| || | ||| || | ||| Sbjct 302269 GGAATTCCTTCCTTGTCTTGGATCTTGGCTTTCACATTCTCAATCGTATCAGATGCTTCC 302328 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 ||||||| ||||||||| || ||||| | ||||| | || |||||||| Sbjct 302329 ACTTCTAAAGTAATGGTCTTGCCAGTCAGAGTTTTCACGAAAATCTGCAT 302378 Score = 109 bits (120), Expect = 1e-18 Identities = 134/183 (73%), Gaps = 0/183 (0%) Strand=Plus/Plus Query 192354 GATATTATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCT 192413 ||| || || || || || ||||| |||| |||| || || ||||||||||| | || Sbjct 301968 GATGTTGTAGTCCGACAAAGTTCGGCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGTCG 302027 Query 192414 CTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGA 192473 ||| || || ||||| || ||||| || ||||| || || ||| ||||| || | Sbjct 302028 CTGCTGGTCTGGTGGAATGCCTTCCTTGTCTTGGATCTTGGCTTTCACATTCTCAATCGT 302087 Query 192474 ATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTG 192533 |||||| | || ||||| | |||||| ||||| || || || ||||| | |||||||| Sbjct 302088 ATCTGATGCCTCCACTTCCAAAGTAATCGTTTTGCCTGTCAAGGTTTTGACGAATATCTG 302147 Query 192534 CAT 192536 ||| Sbjct 302148 CAT 302150 Score = 105 bits (116), Expect = 1e-17 Identities = 123/166 (74%), Gaps = 0/166 (0%) Strand=Plus/Plus Query 192372 TGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTAT 192431 ||| ||| |||| |||| || || ||||||||||| | || ||||||||||||||| || Sbjct 300708 TGTGCGTCCATCCTCCAGCTGCTTGCCAGCAAAGATCAGTCGCTGTTGATCAGGTGGAAT 300767 Query 192432 TCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTACTTC 192491 ||||||||| || || || || ||| ||||| || | ||| || | |||||||| Sbjct 300768 TCCTTCTTTGTCCTGAATCTTGGCTTTAACATTCTCAATCGTATCAGAAGCCTCTACTTC 300827 Query 192492 TAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATT 192537 | || || || || || || | || |||| ||| ||||||||| Sbjct 300828 CAATGTGATTGTCTTGCCTGTCAGAGTCTTAACAAAGATCTGCATT 300873 Score = 84.2 bits (92), Expect = 4e-11 Identities = 78/99 (79%), Gaps = 0/99 (0%) Strand=Plus/Plus Query 192354 GATATTATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCT 192413 |||||||||||| || | ||||| |||| |||| ||||| ||||||||||| | || Sbjct 297751 GATATTATAATCTGAGAGGGTTCGGCCATCCTCCAGCTGTTTGCCAGCAAAGATCAGTCG 297810 Query 192414 CTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTT 192452 ||| || || ||||| ||||||||||| || || || || Sbjct 297811 CTGCTGGTCTGGTGGAATTCCTTCTTTGTCCTGGATCTT 297849 >seq70 Length=429657 Score = 114 bits (126), Expect = 3e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 192309 ACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGA 192368 |||||||| || || | || || || | || | |||||| ||| || ||||| || Sbjct 142577 ACCACCTCGGAGGCGAAGAACCAAGTGCAGGGTTGATTCTTTATGGATGTTGTAATCTGA 142518 Query 192369 TAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGG 192428 ||| || || |||| |||||||| || |||||||| ||||| | ||||||| ||| || Sbjct 142517 TAAGGTGCGGCCATCCTCCAATTGCTTGCCAGCAAAAATTAAACGTTGTTGATGAGGAGG 142458 Query 192429 TATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTAC 192488 |||||||| || || || ||||| ||| | || | | || || | ||| || Sbjct 142457 AATTCCTTCCTTGTCCTGAATTTTTCGTTTCAAGTTTTCAACGGTGTCAGATGGTTCAAC 142398 Query 192489 TTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 ||| |||||||||||||| ||||| | || || | ||| | ||||| Sbjct 142397 TTCAAGAGTAATGGTTTTTCCAGTGAGAGTCTTCACAAAGACTTGCAT 142350 >seq1183 Length=31732 Score = 113 bits (124), Expect = 9e-20 Identities = 163/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 |||||||| | ||||| ||||| || || | || | ||||| ||| || ||||| Sbjct 15650 ATACCACCACGCAGACGCAATACCAAGTGGAGGGTGGATTCTTTCTGGATGTTGTAATCT 15709 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 ||||| || || |||| |||||||| || ||||||||||| | || ||| || ||||| Sbjct 15710 GATAAGGTGCGGCCATCTTCCAATTGCTTGCCAGCAAAGATAAGTCGCTGCTGCTCAGGG 15769 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || ||||| || || || | || || |||| ||| || | ||| | | ||| Sbjct 15770 GGGATACCTTCCTTGTCCTGCAGCTTTTTCTTTAGATTCTCAATGGTATCAGCTGGCTCT 15829 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || || ||||| ||||| || || || | || || | || |||||||| Sbjct 15830 ACCTCCAGAGTGATGGTCTTCCCTGTCAGGGTCTTCACGAAAATCTGCAT 15879 >seq623 Length=111817 Score = 113 bits (124), Expect = 9e-20 Identities = 134/182 (74%), Gaps = 0/182 (0%) Strand=Plus/Plus Query 192355 ATATTATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTC 192414 ||||| || ||||| | ||| || |||| ||||| || || || ||||| ||||| | Sbjct 110338 ATATTGTAGTCAGAAAGTGTACGACCATCTTCCAACTGCTTTCCTGCAAAAATTAAACGT 110397 Query 192415 TGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAA 192474 ||||||||||| || |||||||| || || || ||||| ||| || || || | Sbjct 110398 TGTTGATCAGGAGGAATTCCTTCCTTGTCCTGAATTTTTGCTTTAACGTTTTCAATGGTG 110457 Query 192475 TCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGC 192534 || |||| ||| ||||| ||| |||||||||| ||||| | || || | ||| || ||| Sbjct 110458 TCAGACGTTTCCACTTCAAGAATAATGGTTTTTCCAGTGAGAGTCTTCACAAAGATTTGC 110517 Query 192535 AT 192536 || Sbjct 110518 AT 110519 Score = 100 bits (110), Expect = 6e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 192309 ACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGA 192368 |||||||| || || | || ||||| | || | ||||| ||| || ||||| || Sbjct 107647 ACCACCTCGGAGGCGAAGAACCAAATGCAGGGTTGATTCTTTCTGGATGTTGTAATCTGA 107706 Query 192369 TAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGG 192428 ||| || || |||| |||||||| || ||||||||||| | || ||| || |||| || Sbjct 107707 TAAGGTACGGCCATCCTCCAATTGCTTGCCAGCAAAGATAAGTCGCTGCTGGCCAGGAGG 107766 Query 192429 TATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTAC 192488 || ||||| || || || || || ||| || || || | ||| | | ||||| Sbjct 107767 GATACCTTCCTTGTCCTGGATCTTTGCTTTCACGTTCTCAATGGTATCAGCTGGCTCTAC 107826 Query 192489 TTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || ||||| ||||| || || || | || || | ||| |||||||| Sbjct 107827 CTCCAGAGTGATGGTCTTCCCTGTCAGGGTCTTCACAAAAATCTGCAT 107874 >seq352 Length=269356 Score = 95.1 bits (104), Expect = 2e-14 Identities = 130/182 (71%), Gaps = 0/182 (0%) Strand=Plus/Plus Query 192355 ATATTATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTC 192414 ||||| || ||||| | ||| || |||| ||||| || || || ||||| ||||| | Sbjct 29313 ATATTGTAGTCAGAAATTGTACGACCATCTTCCAACTGCTTTCCTGCAAAAATTAAACGT 29372 Query 192415 TGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAA 192474 ||||||||||| || |||||||| || || | | ||| ||| || | || | Sbjct 29373 TGTTGATCAGGGGGAATTCCTTCCTTGTCGTTGAGTTTGCGTTTCACGTCTTCAATGGTG 29432 Query 192475 TCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGC 192534 || ||| ||| ||||| ||||||| |||||| ||||| | || || | ||| || ||| Sbjct 29433 TCAAACGTTTCCACTTCAAGAGTAACGGTTTTTCCAGTGAGAGTCTTCACAAAGATTTGC 29492 Query 192535 AT 192536 || Sbjct 29493 AT 29494 >seq513 Length=652068 Score = 93.3 bits (102), Expect = 8e-14 Identities = 121/165 (73%), Gaps = 2/165 (1%) Strand=Plus/Plus Query 50117 ATACATTTCAGAATGTACAGCTTCCATAGCTATTTGAAATGAATAAAATTGTCTTGCTTC 50176 ||||||||| ||||| ||| |||||| ||||| ||||| ||| || ||||||||| Sbjct 207397 ATACATTTCTGAATGGACATTTTCCATCGCTATCTGAAAGCCATAGAAGCATCTTGCTTC 207456 Query 50177 TGAATAC-TGAACTTCGGAAAAGAATCGTTCAACTAAATTCTCAGATACAATACCATCAG 50235 || ||| || ||||| ||||| || || ||||||||| ||||| ||||| | Sbjct 207457 TG-TTACTTGTACTTCCTGGCTGAATCTCTCTACCAAATTCTCATTAACAATTCCATCTG 207515 Query 50236 ATGCTGCGAAGAATGCTAAAACGTATTTAATAAAATGTTTTTCAT 50280 | ||||| || ||||||| || | ||||||||| |||||| Sbjct 207516 AAGCTGCAAAAAATGCTAGTACATGGGAGATAAAATGTCTTTCAT 207560 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 984080626613700