Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zootermopsis_20nevadensis_20[genbank_20GCA_5F000696155.1_202014-06- 05] 31,662 sequences; 485,009,472 total letters Query= NC_021249.1 Length=282895 Score E Sequences producing significant alignments: (Bits) Value seq583 138 2e-27 seq950 125 1e-23 seq70 109 1e-18 seq1183 104 4e-17 seq623 95.1 2e-14 >seq583 Length=527131 Score = 138 bits (152), Expect = 2e-27 Identities = 141/184 (77%), Gaps = 0/184 (0%) Strand=Plus/Minus Query 171887 AATATTATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCT 171946 |||||||||||| || || | || | || || ||||| || |||||||| || |||| Sbjct 233041 AATATTATAATCCGACAACGTGCGACCATCTTCTAATTGCTTCCCAGCAAAGATCAATCG 232982 Query 171947 CTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGT 172006 ||||||||| ||||| || |||||||||||||| || ||| || ||||| ||| || Sbjct 232981 CTGTTGGTCCGGTGGGATACCTTCTTTATCTTGAATCTTAGCCTTGACATTTTCTATGGT 232922 Query 172007 ATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTG 172066 ||| |||| || ||||| || || || |||||||| |||| ||||| | ||| || || Sbjct 232921 ATCCGACGCCTCAACTTCGAGGGTTATAGTTTTACCCGTTAGGGTTTTTACGAAAATTTG 232862 Query 172067 CATT 172070 |||| Sbjct 232861 CATT 232858 >seq950 Length=836093 Score = 125 bits (138), Expect = 1e-23 Identities = 146/197 (74%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 171873 GTAGCCTCTTTAGAAATATTATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCA 171932 |||| |||||| |||||||||||||| | | ||| | || |||| || || ||| Sbjct 297509 GTAGACTCTTTCTGGATATTATAATCTGAGAGGGTTCGGCCATCCTCCAGCTGCTTGCCA 297568 Query 171933 GCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTT 171992 ||||| || | || ||| ||||| ||||| || |||||||| || || || || ||| Sbjct 297569 GCAAAGATCAGTCGCTGCTGGTCTGGTGGAATGCCTTCTTTGTCCTGGATCTTGGCTTTC 297628 Query 171993 ACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTT 172052 || || || ||||| || | |||||||| |||||||||||||| || || || ||| Sbjct 297629 ACGTTCTCAATTGTATCAGAAGCCTCTACTTCCAGAGTAATGGTTTTTCCTGTCAAGGTT 297688 Query 172053 TTAATGAATATCTGCAT 172069 || | ||||||||||| Sbjct 297689 TTGACAAATATCTGCAT 297705 Score = 122 bits (134), Expect = 2e-22 Identities = 165/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 || ||||||| ||| | | || | ||| | |||| || || ||||||||||| Sbjct 302149 ATGCCACCTCGAAGCCTGAGGACGAGATGAAGTGTAGATTCCTTCTGGATATTATAATCA 302208 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 || | | ||| | || |||| || || |||||||| || | || ||| ||||| ||| Sbjct 302209 GAGAGGGTTCGGCCATCCTCCAGCTGCTTGCCAGCAAAGATCAGTCGCTGCTGGTCTGGT 302268 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || |||||||| || ||||| || || ||| ||||| || ||||| || | ||| Sbjct 302269 GGAATTCCTTCCTTGTCTTGGATCTTGGCTTTCACATTCTCAATCGTATCAGATGCTTCC 302328 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 ||||||| ||||||||| || ||||| | ||||| | ||| |||||||| Sbjct 302329 ACTTCTAAAGTAATGGTCTTGCCAGTCAGAGTTTTCACGAAAATCTGCAT 302378 Score = 113 bits (124), Expect = 8e-20 Identities = 134/182 (74%), Gaps = 0/182 (0%) Strand=Plus/Plus Query 171888 ATATTATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTC 171947 || || || || || |||| ||| | || |||| || || |||||||| || | || | Sbjct 301969 ATGTTGTAGTCCGACAAAGTTCGGCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGTCGC 302028 Query 171948 TGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTA 172007 || ||||| ||||| || ||||| || ||||| || || ||| ||||| || ||| Sbjct 302029 TGCTGGTCTGGTGGAATGCCTTCCTTGTCTTGGATCTTGGCTTTCACATTCTCAATCGTA 302088 Query 172008 TCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGC 172067 ||||| | || ||||| | |||||| ||||| || || || ||||| | |||||||||| Sbjct 302089 TCTGATGCCTCCACTTCCAAAGTAATCGTTTTGCCTGTCAAGGTTTTGACGAATATCTGC 302148 Query 172068 AT 172069 || Sbjct 302149 AT 302150 Score = 89.7 bits (98), Expect = 9e-13 Identities = 117/162 (72%), Gaps = 0/162 (0%) Strand=Plus/Plus Query 171909 CGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCT 171968 ||| | || |||| || || |||||||| || | || |||||| |||||||| |||||| Sbjct 300712 CGTCCATCCTCCAGCTGCTTGCCAGCAAAGATCAGTCGCTGTTGATCAGGTGGAATTCCT 300771 Query 171969 TCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGA 172028 ||||| || || || || ||| ||||| || ||||| || | |||||||| | Sbjct 300772 TCTTTGTCCTGAATCTTGGCTTTAACATTCTCAATCGTATCAGAAGCCTCTACTTCCAAT 300831 Query 172029 GTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATT 172070 || || || || || || | || |||| || ||||||||| Sbjct 300832 GTGATTGTCTTGCCTGTCAGAGTCTTAACAAAGATCTGCATT 300873 >seq70 Length=429657 Score = 109 bits (120), Expect = 1e-18 Identities = 152/212 (72%), Gaps = 1/212 (0%) Strand=Plus/Minus Query 171834 TTCATAATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTA 171893 |||| || |||||||| || || | || || || | || | |||||| || || Sbjct 142584 TTCAGAA-ACCACCTCGGAGGCGAAGAACCAAGTGCAGGGTTGATTCTTTATGGATGTTG 142526 Query 171894 TAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGG 171953 ||||||||||| | || | || |||||||| || |||||||||||||| | ||||| Sbjct 142525 TAATCTGATAAGGTGCGGCCATCCTCCAATTGCTTGCCAGCAAAAATTAAACGTTGTTGA 142466 Query 171954 TCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGAC 172013 | ||| || |||||||| || || || ||||| ||| | || | || || || Sbjct 142465 TGAGGAGGAATTCCTTCCTTGTCCTGAATTTTTCGTTTCAAGTTTTCAACGGTGTCAGAT 142406 Query 172014 GATTCTACTTCTAGAGTAATGGTTTTACCAGT 172045 | ||| ||||| |||||||||||||| ||||| Sbjct 142405 GGTTCAACTTCAAGAGTAATGGTTTTTCCAGT 142374 >seq1183 Length=31732 Score = 104 bits (114), Expect = 4e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 |||||||| | || || ||||| || || | || | ||||| || || |||||| Sbjct 15650 ATACCACCACGCAGACGCAATACCAAGTGGAGGGTGGATTCTTTCTGGATGTTGTAATCT 15709 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 ||||| | || | || |||||||| || |||||||| || | || ||| || ||||| Sbjct 15710 GATAAGGTGCGGCCATCTTCCAATTGCTTGCCAGCAAAGATAAGTCGCTGCTGCTCAGGG 15769 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || ||||| || || || | || || |||| ||| || ||||| | | ||| Sbjct 15770 GGGATACCTTCCTTGTCCTGCAGCTTTTTCTTTAGATTCTCAATGGTATCAGCTGGCTCT 15829 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 || || ||||| ||||| || || || | || || | ||| |||||||| Sbjct 15830 ACCTCCAGAGTGATGGTCTTCCCTGTCAGGGTCTTCACGAAAATCTGCAT 15879 Score = 89.7 bits (98), Expect = 9e-13 Identities = 129/182 (71%), Gaps = 0/182 (0%) Strand=Plus/Plus Query 171888 ATATTATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTC 171947 || || ||||||||||| | || | || |||||||| || |||||||| || | || | Sbjct 15470 ATGTTGTAATCTGATAAGGTGCGGCCATCTTCCAATTGCTTGCCAGCAAACATAAGTCGC 15529 Query 171948 TGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTA 172007 || || ||||| || || ||||| || || || | || || |||| ||| || ||| Sbjct 15530 TGCTGCTCAGGGGGGATACCTTCCTTGTCCTGCAGCTTTTTCTTTAGATTCTCAATGGTA 15589 Query 172008 TCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGC 172067 || | | ||||| || ||||| ||||| || || || | || || | || |||||| Sbjct 15590 TCAGCTGGCTCTACCTCCAGAGTGATGGTCTTCCCTGTCAGGGTCTTCACAAAAATCTGC 15649 Query 172068 AT 172069 || Sbjct 15650 AT 15651 >seq623 Length=111817 Score = 95.1 bits (104), Expect = 2e-14 Identities = 114/155 (74%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 171915 TCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTA 171974 || ||||| || || || ||||||||||| | ||||| ||||| || |||||||| || Sbjct 110365 TCTTCCAACTGCTTTCCTGCAAAAATTAAACGTTGTTGATCAGGAGGAATTCCTTCCTTG 110424 Query 171975 TCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATG 172034 || || ||||| ||| || || || || || |||| ||| ||||| ||| ||||| Sbjct 110425 TCCTGAATTTTTGCTTTAACGTTTTCAATGGTGTCAGACGTTTCCACTTCAAGAATAATG 110484 Query 172035 GTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 ||||| ||||| | || || | || || ||||| Sbjct 110485 GTTTTTCCAGTGAGAGTCTTCACAAAGATTTGCAT 110519 Score = 93.3 bits (102), Expect = 8e-14 Identities = 163/236 (69%), Gaps = 1/236 (0%) Strand=Plus/Plus Query 171834 TTCATAATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTA 171893 |||| || |||||||| || || | || ||||| | || | ||||| || || Sbjct 107640 TTCAGAA-ACCACCTCGGAGGCGAAGAACCAAATGCAGGGTTGATTCTTTCTGGATGTTG 107698 Query 171894 TAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGG 171953 ||||||||||| | || | || |||||||| || |||||||| || | || ||| ||| Sbjct 107699 TAATCTGATAAGGTACGGCCATCCTCCAATTGCTTGCCAGCAAAGATAAGTCGCTGCTGG 107758 Query 171954 TCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGAC 172013 |||| || || ||||| || || || || || ||| || || || ||||| | Sbjct 107759 CCAGGAGGGATACCTTCCTTGTCCTGGATCTTTGCTTTCACGTTCTCAATGGTATCAGCT 107818 Query 172014 GATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 | ||||| || ||||| ||||| || || || | || || | || |||||||| Sbjct 107819 GGCTCTACCTCCAGAGTGATGGTCTTCCCTGTCAGGGTCTTCACAAAAATCTGCAT 107874 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 904777769799600