Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zootermopsis_20nevadensis_20[genbank_20GCA_5F000696155.1_202014-06- 05] 31,662 sequences; 485,009,472 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq70 145 7e-30 seq950 140 3e-28 seq623 122 8e-23 seq583 118 1e-21 seq352 100 3e-16 seq1183 82.4 7e-11 >seq70 Length=429657 Score = 145 bits (160), Expect = 7e-30 Identities = 163/218 (75%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 24695 ATTGATACGATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTA 24754 ||||| | |||||| ||||| | || || || || || ||||| ||||| || ||||| Sbjct 142341 ATTGACAGGATGCAAGTCTTTGTGAAGACTCTCACTGGAAAAACCATTACTCTTGAAGTT 142400 Query 24755 GAAGCCACCGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCT 24814 ||| | | ||||| || |||| | |||| ||| || || ||||| |||||||| ||| Sbjct 142401 GAACCATCTGACACCGTTGAAAACTTGAAACGAAAAATTCAGGACAAGGAAGGAATTCCT 142460 Query 24815 CCCGATCAACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCA 24874 || ||||||||||||| || ||||| || || || |||||||| | | | | ||| Sbjct 142461 CCTCATCAACAACGTTTAATTTTTGCTGGCAAGCAATTGGAGGATGGCCGCACCTTATCA 142520 Query 24875 GATTATAACATTCAAAAGGAATCGACACTACACTTGGT 24912 ||||| ||||| || || ||||| || || |||||||| Sbjct 142521 GATTACAACATCCATAAAGAATCAACCCTGCACTTGGT 142558 >seq950 Length=836093 Score = 140 bits (154), Expect = 3e-28 Identities = 167/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||| ||| | ||||| | || || ||||| ||||| || |||||||| || | Sbjct 297705 ATGCAGATATTTGTCAAAACCTTGACAGGAAAAACCATTACTCTGGAAGTAGAGGCTTCT 297646 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || ||| | || | || ||| |||||||| ||||||||||| || || || || || Sbjct 297645 GATACAATTGAGAACGTGAAAGCCAAGATCCAGGACAAAGAAGGCATTCCACCAGACCAG 297586 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || || |||||||||| || || |||||||||||| ||| | | ||||||||||| Sbjct 297585 CAGCGACTGATCTTTGCTGGCAAGCAGCTGGAGGATGGCCGAACCCTCTCAGATTATAAT 297526 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 || || || || || ||||| ||| | ||| | || | || ||||| Sbjct 297525 ATCCAGAAAGAGTCTACACTCCACCTTGTGCTTCGTCTCCGGGGAGG 297479 Score = 127 bits (140), Expect = 2e-24 Identities = 150/203 (74%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||| || | ||||| || || || || || ||||| | ||||| ||||| | Sbjct 302378 ATGCAGATTTTCGTGAAAACTCTGACTGGCAAGACCATTACTTTAGAAGTGGAAGCATCT 302319 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || || | || | || ||| |||||||||||||| |||||||| || || || || Sbjct 302318 GATACGATTGAGAATGTGAAAGCCAAGATCCAAGACAAGGAAGGAATTCCACCAGACCAG 302259 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || || |||||||||| || || |||||||||||| ||| | | || |||||||| Sbjct 302258 CAGCGACTGATCTTTGCTGGCAAGCAGCTGGAGGATGGCCGAACCCTCTCTGATTATAAT 302199 Query 24884 ATTCAAAAGGAATCGACACTACA 24906 || || |||||||| ||||| || Sbjct 302198 ATCCAGAAGGAATCTACACTTCA 302176 Score = 118 bits (130), Expect = 1e-21 Identities = 154/210 (73%), Gaps = 5/210 (2%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||||||| |||| || || || || || || || || | |||||||| || | Sbjct 300872 ATGCAGATCTTTGTTAAGACTCTGACAGGCAAGACAATCACATTGGAAGTAGAGGCTTCT 300813 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || || | || | || ||| ||||| || |||||||||||||| || || |||||| Sbjct 300812 GATACGATTGAGAATGTTAAAGCCAAGATTCAGGACAAAGAAGGAATTCCACCTGATCAA 300753 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACA-TGTCAGATTATAA 24882 || || |||||||||| || || ||||||||||| | || ||| || ||||| || Sbjct 300752 CAGCGACTGATCTTTGCTGGCAAGCAGCTGGAGGA-TGGACGCACACTG---GATTACAA 300697 Query 24883 CATTCAAAAGGAATCGACACTACACTTGGT 24912 || || || ||||| ||||| || |||| Sbjct 300696 CAACCAGAAAGAATCAACACTCCATCTGGT 300667 Score = 113 bits (124), Expect = 4e-20 Identities = 97/120 (81%), Gaps = 0/120 (0%) Strand=Plus/Minus Query 24788 AAGATCCAAGACAAAGAAGGAATACCTCCCGATCAACAACGTTTGATCTTTGCCGGGAAA 24847 |||||||| |||||||||||||| || || || || || || |||||||||| || ||| Sbjct 297849 AAGATCCAGGACAAAGAAGGAATTCCACCAGACCAGCAGCGACTGATCTTTGCTGGCAAA 297790 Query 24848 CAGCTGGAGGATTCGAGAAACATGTCAGATTATAACATTCAAAAGGAATCGACACTACAC 24907 |||||||||||| ||| | | ||||||||||| || || |||||||| ||||| ||| Sbjct 297789 CAGCTGGAGGATGGCCGAACCCTCTCAGATTATAATATCCAGAAGGAATCTACACTTCAC 297730 Score = 95.1 bits (104), Expect = 1e-14 Identities = 138/194 (71%), Gaps = 1/194 (1%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||| || | ||||| | || || ||||| ||||| | ||||| || || | Sbjct 302150 ATGCAGATATTCGTCAAAACCTTGACAGGCAAAACGATTACTTTGGAAGTGGAGGCATCA 302091 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || || | || | || ||| |||||||||||||| ||||| || || || || || Sbjct 302090 GATACGATTGAGAATGTGAAAGCCAAGATCCAAGACAAGGAAGGCATTCCACCAGACCAG 302031 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || || |||||||||| || || |||||||| ||| ||| |||| || || ||| Sbjct 302030 CAGCGACTGATCTTTGCTGGCAAGCAGCTGGAAGATGGCCGAACTTTGTCGGACTACAAC 301971 Query 24884 ATTCA-AAAGGAAT 24896 || || ||||| || Sbjct 301970 ATCCAGAAAGGTAT 301957 Score = 91.5 bits (100), Expect = 1e-13 Identities = 106/143 (74%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 24788 AAGATCCAAGACAAAGAAGGAATACCTCCCGATCAACAACGTTTGATCTTTGCCGGGAAA 24847 |||||||| ||||| ||||| || || || || || || || |||||||||| || || Sbjct 299114 AAGATCCAGGACAAGGAAGGCATTCCACCAGACCAGCAGCGACTGATCTTTGCTGGCAAG 299055 Query 24848 CAGCTGGAGGATTCGAGAAACATGTCAGATTATAACATTCAAAAGGAATCGACACTACAC 24907 |||||||||||| ||| ||||||| || ||||| || || || || ||||| ||| Sbjct 299054 CAGCTGGAGGATGGCCGAACTTTGTCAGACTACAACATCCAGAAAGAGTCTACACTCCAC 298995 Query 24908 TTGGTGTTGCGATTGCGCGGAGG 24930 | ||| | || | || ||||| Sbjct 298994 CTTGTGCTTCGTCTCCGGGGAGG 298972 >seq623 Length=111817 Score = 122 bits (134), Expect = 8e-23 Identities = 128/166 (77%), Gaps = 2/166 (1%) Strand=Plus/Minus Query 24695 ATTGATACGATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTA 24754 ||||| | |||||| |||||| | || || || || || ||||| |||| || ||||| Sbjct 110528 ATTGACAGGATGCAAATCTTTGTGAAGACTCTCACTGGAAAAACCATTATTCTTGAAGTG 110469 Query 24755 GAAGCCACCGACACAGTAGAAA-CGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACC 24813 ||| | | ||||| | |||| || |||| ||||| || || ||||| |||||||| || Sbjct 110468 GAAACGTCTGACACCATTGAAAACGTTAAAGCAAAA-ATTCAGGACAAGGAAGGAATTCC 110410 Query 24814 TCCCGATCAACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGAT 24859 ||| |||||||||||||| || ||||| || || ||| |||| ||| Sbjct 110409 TCCTGATCAACAACGTTTAATTTTTGCAGGAAAGCAGTTGGAAGAT 110364 >seq583 Length=527131 Score = 118 bits (130), Expect = 1e-21 Identities = 140/190 (74%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| || || | ||||| ||||| ||||||||||| || |||||||| || || | Sbjct 232859 ATGCAAATTTTCGTAAAAACCCTAACGGGTAAAACTATAACCCTCGAAGTTGAGGCGTCG 232918 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || || |||||| || || ||||| ||||| |||||||| || || || || ||| Sbjct 232919 GATACCATAGAAAATGTCAAGGCTAAGATTCAAGATAAAGAAGGTATCCCACCGGACCAA 232978 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || || ||||||||||| ||||| || | || ||| | | |||| |||||||| Sbjct 232979 CAGCGATTGATCTTTGCTGGGAAGCAATTAGAAGATGGTCGCACGTTGTCGGATTATAAT 233038 Query 24884 ATTCAAAAGG 24893 ||||| |||| Sbjct 233039 ATTCAGAAGG 233048 >seq352 Length=269356 Score = 100 bits (110), Expect = 3e-16 Identities = 121/165 (73%), Gaps = 0/165 (0%) Strand=Plus/Minus Query 24695 ATTGATACGATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTA 24754 ||||| | |||||| |||||| | || || || || || ||||| |||| || ||||| Sbjct 29503 ATTGACAGGATGCAAATCTTTGTGAAGACTCTCACTGGAAAAACCGTTACTCTTGAAGTG 29444 Query 24755 GAAGCCACCGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCT 24814 ||| | ||||| | ||| || |||| || || | ||||| |||||||| || Sbjct 29443 GAAACGTTTGACACCATTGAAGACGTGAAACGCAAACTCAACGACAAGGAAGGAATTCCC 29384 Query 24815 CCCGATCAACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGAT 24859 || |||||||||||||| || ||||| || || ||| |||| ||| Sbjct 29383 CCTGATCAACAACGTTTAATTTTTGCAGGAAAGCAGTTGGAAGAT 29339 >seq1183 Length=31732 Score = 82.4 bits (90), Expect = 7e-11 Identities = 117/165 (71%), Gaps = 0/165 (0%) Strand=Plus/Minus Query 24695 ATTGATACGATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTA 24754 ||||| | ||||| |||||| | ||||| || || || ||||| ||| || ||||| Sbjct 17436 ATTGACAGAATGCAAATCTTTGTGAAAACTCTCACTGGAAAAACCTGTACTCTTGAAGTT 17377 Query 24755 GAAGCCACCGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCT 24814 ||| | | ||||| | |||| || |||||| | | | || || |||||||| || Sbjct 17376 GAACCTTCAGACACCATTGAAAACGTGAAACAACATCTAGAGGAAAAGGAAGGAATTCCC 17317 Query 24815 CCCGATCAACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGAT 24859 | ||||||||||| || | ||||| || || ||| || | ||| Sbjct 17316 TCTGATCAACAACGATTAAATTTTGCAGGAAAGCAGTTGAAAGAT 17272 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449719541777360