Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zootermopsis_20nevadensis_20[genbank_20GCA_5F000696155.1_202014-06- 05] 31,662 sequences; 485,009,472 total letters Query= NC_022646.1 Length=101818 Score E Sequences producing significant alignments: (Bits) Value seq950 109 4e-19 seq352 82.4 5e-11 >seq950 Length=836093 Score = 109 bits (120), Expect = 4e-19 Identities = 158/221 (71%), Gaps = 4/221 (2%) Strand=Plus/Plus Query 34762 CCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTC 34821 ||| ||||| || |||| || |||||||| || ||||| || || ||| | || | Sbjct 302163 CCTGAGGACGAGATGAAGTGTAGATTCCTTCTGGATATTATAATCAGAGAGGGTTCGGCC 302222 Query 34822 ATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTT 34881 ||| ||||| ||||| || || ||||||||||| ||||||||| | || | || ||||| Sbjct 302223 ATCCTCCAGCTGCTTGCCAGCAAAGATCAGTCGCTGCTGGTCTGGTGGAATTCCTTCCTT 302282 Query 34882 GTCGTTTATTTTTTGTTTGACGGATGCT--ATCGATTCATTGGCCTCGACATCAACGGTT 34939 ||| | || || ||| || || || |||| ||| || || || || | || Sbjct 302283 GTCTTGGATCTTGGCTTTCAC--ATTCTCAATCGTATCAGATGCTTCCACTTCTAAAGTA 302340 Query 34940 ATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCATGAT 34980 |||||||| || || || || || || || ||||||||||| Sbjct 302341 ATGGTCTTGCCAGTCAGAGTTTTCACGAAAATCTGCATGAT 302381 Score = 100 bits (110), Expect = 2e-16 Identities = 138/193 (72%), Gaps = 0/193 (0%) Strand=Plus/Plus Query 34786 CTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAA 34845 ||| ||||| || ||||| || || ||| | || |||| ||||| ||||| || || || Sbjct 297514 CTCTTTCTGGATATTATAATCTGAGAGGGTTCGGCCATCCTCCAGCTGCTTGCCAGCAAA 297573 Query 34846 GATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGA 34905 ||||||||| ||||||||| | || | || || ||||| | || || ||| ||| Sbjct 297574 GATCAGTCGCTGCTGGTCTGGTGGAATGCCTTCTTTGTCCTGGATCTTGGCTTTCACGTT 297633 Query 34906 TGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTAC 34965 | || | ||| ||||| || || | || ||||| ||||| || | ||| || || Sbjct 297634 CTCAATTGTATCAGAAGCCTCTACTTCCAGAGTAATGGTTTTTCCTGTCAAGGTTTTGAC 297693 Query 34966 AAAGATCTGCATG 34978 ||| ||||||||| Sbjct 297694 AAATATCTGCATG 297706 Score = 87.8 bits (96), Expect = 1e-12 Identities = 135/191 (71%), Gaps = 4/191 (2%) Strand=Plus/Plus Query 34790 TTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATC 34849 ||||| ||||| |||||||| | | || |||| ||||| ||||| || || |||||| Sbjct 301963 TTCTGGATGTTGTAGTCCGACAAAGTTCGGCCATCTTCCAGCTGCTTGCCAGCAAAGATC 302022 Query 34850 AGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCT 34909 ||||| ||||||||| | || | || |||||||| | || || ||| || || || Sbjct 302023 AGTCGCTGCTGGTCTGGTGGAATGCCTTCCTTGTCTTGGATCTTGGCTTTCAC--ATTCT 302080 Query 34910 --ATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAA 34967 |||| || ||||| || || | || || || || || || | ||| || || | Sbjct 302081 CAATCGTATCTGATGCCTCCACTTCCAAAGTAATCGTTTTGCCTGTCAAGGTTTTGACGA 302140 Query 34968 AGATCTGCATG 34978 | ||||||||| Sbjct 302141 ATATCTGCATG 302151 Score = 82.4 bits (90), Expect = 5e-11 Identities = 92/123 (75%), Gaps = 0/123 (0%) Strand=Plus/Plus Query 34762 CCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTC 34821 ||| ||||| ||||||| || |||||||| || ||||| || || ||| | || | Sbjct 297718 CCTGAGGACGAGGTGAAGTGTAGATTCCTTCTGGATATTATAATCTGAGAGGGTTCGGCC 297777 Query 34822 ATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTT 34881 ||| ||||| || || || || ||||||||||| ||||||||| | || | || || || Sbjct 297778 ATCCTCCAGCTGTTTGCCAGCAAAGATCAGTCGCTGCTGGTCTGGTGGAATTCCTTCTTT 297837 Query 34882 GTC 34884 ||| Sbjct 297838 GTC 297840 Score = 82.4 bits (90), Expect = 5e-11 Identities = 149/213 (70%), Gaps = 9/213 (4%) Strand=Plus/Plus Query 34768 GACCAGGTGAA-TGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGT 34826 |||||| || | || || | || ||||| |||| || ||| || |||| |||| | Sbjct 300666 GACCAGATGGAGTGTTGAT-TCTTTCTGGTTGTTGTAATCC---AGTGTGCGTCCATCCT 300721 Query 34827 CCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGT 34886 |||| ||||| || || ||||||||||| || || || | || | || || ||||| | Sbjct 300722 CCAGCTGCTTGCCAGCAAAGATCAGTCGCTGTTGATCAGGTGGAATTCCTTCTTTGTCCT 300781 Query 34887 TTATTTTTTGTTTGACGGATGCT--ATCGATTCATTGGCCTCGACATCAACGGTTATGGT 34944 || || ||| || || || |||| ||| ||||| || || | || || || Sbjct 300782 GAATCTTGGCTTTAAC--ATTCTCAATCGTATCAGAAGCCTCTACTTCCAATGTGATTGT 300839 Query 34945 CTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 ||| || || || ||||| |||||||||||||| Sbjct 300840 CTTGCCTGTCAGAGTCTTAACAAAGATCTGCAT 300872 >seq352 Length=269356 Score = 82.4 bits (90), Expect = 5e-11 Identities = 131/188 (70%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 34790 TTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATC 34849 ||||| || || ||||| || | | || |||| |||| |||||||| || || || Sbjct 29307 TTCTGTATATTGTAGTCAGAAATTGTACGACCATCTTCCAACTGCTTTCCTGCAAAAATT 29366 Query 34850 AGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCT 34909 | ||||| || || | || | || ||||||||||| | ||| |||| ||| | | Sbjct 29367 AAACGTTGTTGATCAGGGGGAATTCCTTCCTTGTCGTTGAGTTTGCGTTTCACGTCTTCA 29426 Query 34910 ATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAG 34969 || | ||| | || || |||| || | ||| ||||| ||||| ||||| |||||| Sbjct 29427 ATGGTGTCAAACGTTTCCACTTCAAGAGTAACGGTTTTTCCAGTGAGAGTCTTCACAAAG 29486 Query 34970 ATCTGCAT 34977 || ||||| Sbjct 29487 ATTTGCAT 29494 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 325567121458778