Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zootermopsis_20nevadensis_20[genbank_20GCA_5F000696155.1_202014-06- 05] 31,662 sequences; 485,009,472 total letters Query= NC_023442.1 Length=120420 Score E Sequences producing significant alignments: (Bits) Value seq950 136 3e-27 seq70 136 3e-27 seq583 123 2e-23 seq1183 113 3e-20 seq394 87.8 1e-12 seq352 82.4 6e-11 >seq950 Length=836093 Score = 136 bits (150), Expect = 3e-27 Identities = 168/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 29557 TGTCCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCC 29616 || ||||||| | ||| ||||| | || || || || ||||| || || |||||||| Sbjct 297476 TGCCCTCCCCGGAGACGAAGCACAAGGTGGAGTGTAGACTCTTTCTGGATATTATAATCT 297535 Query 29617 GCAATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGC 29676 | | ||| || ||| || || || ||||||||| | |||| || ||||| || || Sbjct 297536 GAGAGGGTTCGGCCATCCTCCAGCTGCTTGCCAGCAAAGATCAGTCGCTGCTGGTCTGGT 297595 Query 29677 GGAATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCT 29736 ||||| || |||||||| || | || ||| || | || | || |||||| ||| Sbjct 297596 GGAATGCCTTCTTTGTCCTGGATCTTGGCTTTCACGTTCTCAATTGTATCAGAAGCCTCT 297655 Query 29737 ACTTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 ||||| ||||| || ||||| || || |||||||| |||||||||||||| Sbjct 297656 ACTTCCAGAGTAATGGTTTTTCCTGTCAAGGTTTTGACAAATATCTGCAT 297705 Score = 100 bits (110), Expect = 2e-16 Identities = 136/190 (72%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 29597 CTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATA 29656 |||| || ||||| || |||| | || || ||| || || || ||||||||| | | Sbjct 301961 CTTTCTGGATGTTGTAGTCCGACAAAGTTCGGCCATCTTCCAGCTGCTTGCCAGCAAAGA 302020 Query 29657 TCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTT 29716 ||| || ||||| || || ||||| || || |||||||| | || ||| ||| | | Sbjct 302021 TCAGTCGCTGCTGGTCTGGTGGAATGCCTTCCTTGTCTTGGATCTTGGCTTTCACATTCT 302080 Query 29717 CTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAA 29776 | | || || || || ||||| | ||| || |||||||| || |||||||| || | Sbjct 302081 CAATCGTATCTGATGCCTCCACTTCCAAAGTAATCGTTTTGCCTGTCAAGGTTTTGACGA 302140 Query 29777 ATATCTGCAT 29786 |||||||||| Sbjct 302141 ATATCTGCAT 302150 >seq70 Length=429657 Score = 136 bits (150), Expect = 3e-27 Identities = 159/215 (74%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 29572 CGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAA 29631 || || ||||| || || || |||||||| || ||||| ||||| | | |||||| | Sbjct 142564 CGAAGAACCAAGTGCAGGGTTGATTCTTTATGGATGTTGTAATCTGATAAGGTGCGGCCA 142505 Query 29632 TCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTG 29691 || || | ||| ||||||||| | || || | ||| |||| || ||||| || || ||| Sbjct 142504 TCCTCCAATTGCTTGCCAGCAAAAATTAAACGTTGTTGATGAGGAGGAATTCCTTCCTTG 142445 Query 29692 TCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATA 29751 || || | |||| |||| | |||| || |||||||| |||| ||||||||||| || Sbjct 142444 TCCTGAATTTTTCGTTTCAAGTTTTCAACGGTGTCAGATGGTTCAACTTCAAGAGTAATG 142385 Query 29752 GTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 ||||| ||||| | || || ||||| | ||||| Sbjct 142384 GTTTTTCCAGTGAGAGTCTTCACAAAGACTTGCAT 142350 >seq583 Length=527131 Score = 123 bits (136), Expect = 2e-23 Identities = 143/190 (75%), Gaps = 2/190 (1%) Strand=Plus/Minus Query 29599 TTTTGAATGTTATAATCCGCAATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATC 29658 || ||||| |||||||||| | |||||| ||| || | ||| || |||||| | ||| Sbjct 233046 TTCTGAATATTATAATCCGACAACGTGCGACCATCTTCTAATTGCTTCCCAGCAAAGATC 232987 Query 29659 AATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTTTTGT-TTGACAGTTTC 29717 |||| || || ||||| || ||||| ||||| ||||| ||| || | |||||| |||| Sbjct 232986 AATCGCTGTTGGTCCGGTGGGATACCTTCTTTATCTTG-AATCTTAGCCTTGACATTTTC 232928 Query 29718 TACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAA 29777 || || || || || ||||| || ||||||||||| || |||| |||||| || || Sbjct 232927 TATGGTATCCGACGCCTCAACTTCGAGGGTTATAGTTTTACCCGTTAGGGTTTTTACGAA 232868 Query 29778 TATCTGCATT 29787 || |||||| Sbjct 232867 AATTTGCATT 232858 >seq1183 Length=31732 Score = 113 bits (124), Expect = 3e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 || || | || ||||| ||||| || || ||||||||||| || ||||| ||||| | Sbjct 15653 CCACCACGCAGACGCAATACCAAGTGGAGGGTGGATTCTTTCTGGATGTTGTAATCTGAT 15712 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | |||||| ||| || | ||| ||||||||| | || | || ||||| || || || Sbjct 15713 AAGGTGCGGCCATCTTCCAATTGCTTGCCAGCAAAGATAAGTCGCTGCTGCTCAGGGGGG 15772 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACT 29739 ||||| || ||||| || | |||| || | | | || | || |||| | ||||| Sbjct 15773 ATACCTTCCTTGTCCTGCAGCTTTTTCTTTAGATTCTCAATGGTATCAGCTGGCTCTACC 15832 Query 29740 TCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || ||||| || || || || || | ||| || || || |||||||| Sbjct 15833 TCCAGAGTGATGGTCTTCCCTGTCAGGGTCTTCACGAAAATCTGCAT 15879 >seq394 Length=806705 Score = 87.8 bits (96), Expect = 1e-12 Identities = 95/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 29559 TCCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGC 29618 ||||||||||| || || || | ||||| || ||||| |||||||| |||||||| | Sbjct 96984 TCCTCCCCTCAGGCGTAGAACTAGGTGAAGTGTAGATTCCTTTTGAATATTATAATCAGA 96925 Query 29619 AATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGG 29678 | || ||| ||| || |||||||| |||||| | |||| | |||||||| || || Sbjct 96924 TAATGTTCGACCATCTTCAAGTTGTTTTCCAGCAAAAATCAGGCGCTGCTGATCAGGGGG 96865 Query 29679 AATACC 29684 ||||| Sbjct 96864 GATACC 96859 >seq352 Length=269356 Score = 82.4 bits (90), Expect = 6e-11 Identities = 132/190 (69%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 29597 CTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATA 29656 |||| || || || || || | ||| || ||| ||| || | || || || ||| | | Sbjct 29305 CTTTCTGTATATTGTAGTCAGAAATTGTACGACCATCTTCCAACTGCTTTCCTGCAAAAA 29364 Query 29657 TCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTT 29716 | || | ||| ||||| || ||||| || || ||||| | | ||| |||| || || Sbjct 29365 TTAAACGTTGTTGATCAGGGGGAATTCCTTCCTTGTCGTTGAGTTTGCGTTTCACGTCTT 29424 Query 29717 CTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAA 29776 | | |||||| | ||| ||||||||||| | ||||| ||||| | || || |||| Sbjct 29425 CAATGGTGTCAAACGTTTCCACTTCAAGAGTAACGGTTTTTCCAGTGAGAGTCTTCACAA 29484 Query 29777 ATATCTGCAT 29786 | || ||||| Sbjct 29485 AGATTTGCAT 29494 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 385070551374342