Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zootermopsis_20nevadensis_20[genbank_20GCA_5F000696155.1_202014-06- 05] 31,662 sequences; 485,009,472 total letters Query= NC_023611.1 Length=198533 Score E Sequences producing significant alignments: (Bits) Value seq11874 100 4e-16 >seq11874 Length=239 Score = 100 bits (110), Expect = 4e-16 Identities = 74/83 (89%), Gaps = 4/83 (5%) Strand=Plus/Minus Query 112836 TTAAAATTTTGAACACAAATTAGAAAAAGTAGTGCG--CGTCACGACTTTTTCCTAAGTT 112893 || ||||||||||||||||| | ||||||||||||| |||| | | ||||||| ||||| Sbjct 126 TTCAAATTTTGAACACAAATCAAAAAAAGTAGTGCGAGCGTCTCAA-TTTTTCC-AAGTT 69 Query 112894 GCAATTCAAGATTTTCAAAATCT 112916 ||||||||||||||||||||||| Sbjct 68 GCAATTCAAGATTTTCAAAATCT 46 Score = 82.4 bits (90), Expect = 1e-10 Identities = 70/83 (84%), Gaps = 4/83 (5%) Strand=Plus/Plus Query 50391 AGATTTTGAAAATCTTGAATCGCACACACCAAAAAAGTCGTGACGC--GCACTACTTTTT 50448 |||||||||||||||||||| ||| || ||||| | | ||||| |||||||||||| Sbjct 46 AGATTTTGAAAATCTTGAATTGCA-ACTTGGAAAAATT-GAGACGCTCGCACTACTTTTT 103 Query 50449 CTGATTTGTGTTCAAAATTTTAA 50471 ||||||||||||||||||| || Sbjct 104 TTGATTTGTGTTCAAAATTTGAA 126 Score = 82.4 bits (90), Expect = 1e-10 Identities = 67/80 (84%), Gaps = 1/80 (1%) Strand=Plus/Plus Query 50253 AACTACATATCTCAAACTACACTAATTTGGTAGTTTATCCACAAACTAATAGTCTAAAAA 50312 ||||| | || ||||||| |||||||| ||||||||||||||||||||| | || |||| Sbjct 146 AACTAGACTTCCCAAACTATACTAATTTAGTAGTTTATCCACAAACTAATTGACTTAAAA 205 Query 50313 ATAG-TAAAAATAGTGGTTA 50331 ||| |||||| | |||||| Sbjct 206 GTAGTTAAAAAGAATGGTTA 225 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 634926212585360