Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zootermopsis_20nevadensis_20[genbank_20GCA_5F000696155.1_202014-06- 05] 31,662 sequences; 485,009,472 total letters Query= NC_023615.1 Length=196456 Score E Sequences producing significant alignments: (Bits) Value seq11874 95.1 2e-14 >seq11874 Length=239 Score = 95.1 bits (104), Expect = 2e-14 Identities = 69/79 (87%), Gaps = 1/79 (1%) Strand=Plus/Plus Query 48704 ACTACACATCTCAAACTATACTAATTTGGTAGTTTATCCACAAACTAATAGTCTAAAAAG 48763 |||| || || |||||||||||||||| ||||||||||||||||||||| | || ||||| Sbjct 147 ACTAGACTTCCCAAACTATACTAATTTAGTAGTTTATCCACAAACTAATTGACTTAAAAG 206 Query 48764 TAG-TAAAAATAGTGGTTA 48781 ||| |||||| | |||||| Sbjct 207 TAGTTAAAAAGAATGGTTA 225 Score = 89.7 bits (98), Expect = 6e-13 Identities = 68/79 (86%), Gaps = 1/79 (1%) Strand=Plus/Minus Query 31263 TAACCACTATTTTTA-CTACTTTTTAGACTATTAGTTTGTGGATAAACTACCAAATTAGT 31321 |||||| | |||||| |||||||| || | ||||||||||||||||||||| |||||||| Sbjct 225 TAACCATTCTTTTTAACTACTTTTAAGTCAATTAGTTTGTGGATAAACTACTAAATTAGT 166 Query 31322 ATAGTTTGAGATATGTAGT 31340 |||||||| || | |||| Sbjct 165 ATAGTTTGGGAAGTCTAGT 147 Score = 89.7 bits (98), Expect = 6e-13 Identities = 68/79 (86%), Gaps = 1/79 (1%) Strand=Plus/Plus Query 175070 ACTACACATCACAAACTACACTAATTTGGTAGTTTATCCACAAACTAATAGTCTAAAAAG 175129 |||| || || ||||||| |||||||| ||||||||||||||||||||| | || ||||| Sbjct 147 ACTAGACTTCCCAAACTATACTAATTTAGTAGTTTATCCACAAACTAATTGACTTAAAAG 206 Query 175130 TAG-TAAAAATAGTGGTTA 175147 ||| |||||| | |||||| Sbjct 207 TAGTTAAAAAGAATGGTTA 225 Score = 86.0 bits (94), Expect = 8e-12 Identities = 67/79 (85%), Gaps = 1/79 (1%) Strand=Plus/Minus Query 111503 TAACCACTATTTTTA-CTACTTTTTAGACTATTAGTTTGTGGACAAACTACCAAATTAGT 111561 |||||| | |||||| |||||||| || | ||||||||||||| ||||||| |||||||| Sbjct 225 TAACCATTCTTTTTAACTACTTTTAAGTCAATTAGTTTGTGGATAAACTACTAAATTAGT 166 Query 111562 GTAGTTTGAGATGTGTAGT 111580 ||||||| || || |||| Sbjct 165 ATAGTTTGGGAAGTCTAGT 147 Score = 86.0 bits (94), Expect = 8e-12 Identities = 67/79 (85%), Gaps = 1/79 (1%) Strand=Plus/Plus Query 174673 ACTACACATCTCAAACTACACTAATTTGGTAGTTTATCCACAAACTAATAGTCTAAAAAA 174732 |||| || || ||||||| |||||||| ||||||||||||||||||||| | || |||| Sbjct 147 ACTAGACTTCCCAAACTATACTAATTTAGTAGTTTATCCACAAACTAATTGACTTAAAAG 206 Query 174733 TAG-TAAAAATAGTGGTTA 174750 ||| |||||| | |||||| Sbjct 207 TAGTTAAAAAGAATGGTTA 225 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628282443064320