Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zootermopsis_20nevadensis_20[genbank_20GCA_5F000696155.1_202014-06- 05] 31,662 sequences; 485,009,472 total letters Query= NC_025257.1 Length=102759 Score E Sequences producing significant alignments: (Bits) Value seq70 105 4e-18 seq1183 95.1 8e-15 >seq70 Length=429657 Score = 105 bits (116), Expect = 4e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 |||||||| | || | ||||| || || || ||||| || ||||||||||| || Sbjct 142577 ACCACCTCGGAGGCGAAGAACCAAGTGCAGGGTTGATTCTTTATGGATGTTGTAATCTGA 142518 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 | ||||| | || |||||||| || || |||||||| ||||| || |||| | || Sbjct 142517 TAAGGTGCGGCCATCCTCCAATTGCTTGCCAGCAAAAATTAAACGTTGTTGATGAGGAGG 142458 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTCACGGTGTCGCTTGATTCCAC 33701 | ||||| ||||| |||||| ||||||| | |||||||| || ||| || Sbjct 142457 AATTCCTTCCTTGTCCTGAATTTTTCGTTTCAAGTTTTCAACGGTGTCAGATGGTTCAAC 142398 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 |||| || || ||||| || || | || || ||||||| ||||| Sbjct 142397 TTCAAGAGTAATGGTTTTTCCAGTGAGAGTCTTCACAAAGACTTGCAT 142350 >seq1183 Length=31732 Score = 95.1 bits (104), Expect = 8e-15 Identities = 161/230 (70%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 |||||| | || ||| || ||||| || || ||| ||||| || ||||||||||| || Sbjct 15652 ACCACCACGCAGACGCAATACCAAGTGGAGGGTGGATTCTTTCTGGATGTTGTAATCTGA 15711 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 | ||||| | || |||||||| || || ||||| || | |||||||| || | || Sbjct 15712 TAAGGTGCGGCCATCTTCCAATTGCTTGCCAGCAAAGATAAGTCGCTGCTGCTCAGGGGG 15771 Query 33642 CACACCTTCTTTGT-CGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCC 33699 | |||||| |||| | ||| ||| | ||| | || || | ||| || || || Sbjct 15772 GATACCTTCCTTGTCCTGCAGCTTTTTCTTT--AGATTCTCAATGGTATCAGCTGGCTCT 15829 Query 33700 ACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || || | ||||| || || ||||| | || || || || |||||||| Sbjct 15830 ACCTCCAGAGTGATGGTCTTCCCTGTCAGGGTCTTCACGAAAATCTGCAT 15879 Score = 86.0 bits (94), Expect = 4e-12 Identities = 162/232 (70%), Gaps = 6/232 (3%) Strand=Plus/Plus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGT-GCTCTCTTTTTGTATGTTGTAATCGG 33580 |||||||| | || | ||||| || || || | || |||| || ||||||||||| | Sbjct 15424 ACCACCTCGGAGGCGAAGAACCAAGTGCAGGGTTGATC-CTTTCTGGATGTTGTAATCTG 15482 Query 33581 AGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCG 33640 | | ||||| | || |||||||| || || ||||| || | |||||||| || | | Sbjct 15483 ATAAGGTGCGGCCATCTTCCAATTGCTTGCCAGCAAACATAAGTCGCTGCTGCTCAGGGG 15542 Query 33641 GCACACCTTCTTTGT-CGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTC 33698 | | |||||| |||| | ||| ||| | ||| | || || | ||| || || || Sbjct 15543 GGATACCTTCCTTGTCCTGCAGCTTTTTCTTT--AGATTCTCAATGGTATCAGCTGGCTC 15600 Query 33699 CACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 || || | ||||| || || ||||| | || || ||||| ||||||||| Sbjct 15601 TACCTCCAGAGTGATGGTCTTCCCTGTCAGGGTCTTCACAAAAATCTGCATA 15652 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 328577159495040