Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zootermopsis_20nevadensis_20[genbank_20GCA_5F000696155.1_202014-06- 05] 31,662 sequences; 485,009,472 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq950 123 6e-23 seq623 95.1 3e-14 seq1183 91.5 3e-13 >seq950 Length=836093 Score = 123 bits (136), Expect = 6e-23 Identities = 153/207 (74%), Gaps = 2/207 (1%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||||||| |||||| | ||||||||||| || ||| ||||||| || |||||| Sbjct 297702 CAGATATTTGTCAAAACCTTGACAGGAAAAACCATTACTCTGGAAGTAGAGGCTTCTGAT 297643 Query 206233 ACAGTCGAATCAGT-AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCA 206291 ||| | || || ||||| || ||| || || |||||||| ||| || ||| || Sbjct 297642 ACAATTGAGAACGTGAAAGCCAA-GATCCAGGACAAAGAAGGCATTCCACCAGACCAGCA 297584 Query 206292 AAGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGT 206351 |||| ||||| || || |||||| |||| ||||| | || | | ||||| || | Sbjct 297583 GCGACTGATCTTTGCTGGCAAGCAGCTGGAGGATGGCCGAACCCTCTCAGATTATAATAT 297524 Query 206352 CCAGAAAGAGTCTACTCTTCACCTTGT 206378 ||||||||||||||| || |||||||| Sbjct 297523 CCAGAAAGAGTCTACACTCCACCTTGT 297497 Score = 111 bits (122), Expect = 4e-19 Identities = 139/188 (74%), Gaps = 2/188 (1%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 |||||||| |||||| | ||||| |||||||| |||||||||||||| || || Sbjct 302147 CAGATATTCGTCAAAACCTTGACAGGCAAAACGATTACTTTGGAAGTGGAGGCATCAGAT 302088 Query 206233 ACAGTCGAATCAGT-AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCA 206291 || | || || ||||| ||||| ||||| || ||||| ||| || ||| || Sbjct 302087 ACGATTGAGAATGTGAAAGC-CAAGATCCAAGACAAGGAAGGCATTCCACCAGACCAGCA 302029 Query 206292 AAGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGT 206351 |||| ||||| || || |||||| |||||||||| | |||||| | || |||||| | Sbjct 302028 GCGACTGATCTTTGCTGGCAAGCAGCTGGAAGATGGCCGAACTTTGTCGGACTACAACAT 301969 Query 206352 CCAGAAAG 206359 |||||||| Sbjct 301968 CCAGAAAG 301961 Score = 98.7 bits (108), Expect = 2e-15 Identities = 148/207 (71%), Gaps = 5/207 (2%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| || || || ||||| || || ||||| |||||||| || |||||| Sbjct 300869 CAGATCTTTGTTAAGACTCTGACAGGCAAGACAATCACATTGGAAGTAGAGGCTTCTGAT 300810 Query 206233 ACAGTCGAATCAGT-AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCA 206291 || | || || ||||| || |||||| || |||||||||||| || || || Sbjct 300809 ACGATTGAGAATGTTAAAGCCAA-GATTCAGGACAAAGAAGGAATTCCACCTGATCAACA 300751 Query 206292 AAGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGT 206351 |||| ||||| || || |||||| |||| |||||| | || || ||||||||| Sbjct 300750 GCGACTGATCTTTGCTGGCAAGCAGCTGGAGGATGGACGCACACTG---GATTACAACAA 300694 Query 206352 CCAGAAAGAGTCTACTCTTCACCTTGT 206378 ||||||||| || || || || || || Sbjct 300693 CCAGAAAGAATCAACACTCCATCTGGT 300667 Score = 95.1 bits (104), Expect = 3e-14 Identities = 96/125 (77%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 206254 AAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGCCGGAAAG 206313 ||||| || || || ||||| ||| || ||| || |||| ||||| || || ||| Sbjct 299114 AAGATCCAGGACAAGGAAGGCATTCCACCAGACCAGCAGCGACTGATCTTTGCTGGCAAG 299055 Query 206314 CAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTACTCTTCAC 206373 ||| |||| ||||| | |||||| | || |||||| |||||||||||||||| || ||| Sbjct 299054 CAGCTGGAGGATGGCCGAACTTTGTCAGACTACAACATCCAGAAAGAGTCTACACTCCAC 298995 Query 206374 CTTGT 206378 ||||| Sbjct 298994 CTTGT 298990 Score = 86.0 bits (94), Expect = 1e-11 Identities = 74/92 (80%), Gaps = 0/92 (0%) Strand=Plus/Plus Query 204764 ACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTCCTTCCATCTTCC 204823 |||||||| || |||||||||||||||| || ||||| | |||||| | ||||| ||| Sbjct 298990 ACAAGGTGGAGTGTAGACTCTTTCTGGATGTTGTAGTCTGACAAAGTTCGGCCATCCTCC 299049 Query 204824 AGCTGCTTTCCGGCGAAGATAAGCCGTTGTTG 204855 |||||||| || || ||||| || || || || Sbjct 299050 AGCTGCTTGCCAGCAAAGATCAGTCGCTGCTG 299081 >seq623 Length=111817 Score = 95.1 bits (104), Expect = 3e-14 Identities = 128/176 (73%), Gaps = 2/176 (1%) Strand=Plus/Minus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 || || ||||| |||||||| || | | | |||||||||| |||||||| | ||| Sbjct 110504 AAGACTCTCACTGGAAAAACCATTATTCTTGAAGTGGAAACGTCTGACACCATTGAAAAC 110445 Query 206245 GT-AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTT 206303 || ||||||||| ||||| || || ||||||||| || || ||| | | || || Sbjct 110444 GTTAAAGCAAAA-ATTCAGGACAAGGAAGGAATTCCTCCTGATCAACAACGTTTAATTTT 110386 Query 206304 CGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAG 206359 || |||||||||||||||||||| | || | | || ||||| | ||||||| Sbjct 110385 TGCAGGAAAGCAGTTGGAAGATGGTCGTACACTTTCTGACTACAATATACAGAAAG 110330 >seq1183 Length=31732 Score = 91.5 bits (100), Expect = 3e-13 Identities = 146/208 (70%), Gaps = 4/208 (2%) Strand=Plus/Minus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGA--AT 206242 || || || ||||| || || |||||| |||| || || |||| || | || || Sbjct 15864 AAGACCCTGACAGGGAAGACCATCACTCTGGAGGTAGAGCCAGCTGATACCATTGAGAAT 15805 Query 206243 CAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCT 206302 | ||||| ||||| | || || || ||||| || || || || ||||||||| Sbjct 15804 C--TAAAGAAAAAGCTGCAGGACAAGGAAGGTATCCCCCCTGAGCAGCAGCGACTTATCT 15747 Query 206303 TCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGT 206362 | || || ||||| ||||||||||| | || || | ||||||||| |||||||||| | Sbjct 15746 TTGCTGGCAAGCAATTGGAAGATGGCCGCACCTTATCAGATTACAACATCCAGAAAGAAT 15687 Query 206363 CTACTCTTCACCTTGTTTTGAGACTTCG 206390 | || || ||| | || ||| | || || Sbjct 15686 CCACCCTCCACTTGGTATTGCGTCTGCG 15659 Score = 84.2 bits (92), Expect = 5e-11 Identities = 145/209 (69%), Gaps = 4/209 (2%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| || || || ||||| || || |||||| |||| || || |||| Sbjct 15648 CAGATTTTTGTGAAGACCCTGACAGGGAAGACCATCACTCTGGAGGTAGAGCCAGCTGAT 15589 Query 206233 ACAGTCGA--ATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTC 206290 || | || ||| ||||| ||||| | || || || ||||| || || || | Sbjct 15588 ACCATTGAGAATC--TAAAGAAAAAGCTGCAGGACAAGGAAGGTATCCCCCCTGAGCAGC 15531 Query 206291 AAAGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACG 206350 | ||||||| || || || ||||| ||||||||||| | || || | ||||||||| Sbjct 15530 AGCGACTTATGTTTGCTGGCAAGCAATTGGAAGATGGCCGCACCTTATCAGATTACAACA 15471 Query 206351 TCCAGAAAGAGTCTACTCTTCACCTTGTT 206379 ||||||||| || || || ||| | ||| Sbjct 15470 TCCAGAAAGGATCAACCCTGCACTTGGTT 15442 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1181341371494702