Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zootermopsis_20nevadensis_20[genbank_20GCA_5F000696155.1_202014-06- 05] 31,662 sequences; 485,009,472 total letters Query= NC_026511.1 Length=140913 Score E Sequences producing significant alignments: (Bits) Value seq950 116 3e-21 seq1183 89.7 5e-13 seq623 87.8 2e-12 >seq950 Length=836093 Score = 116 bits (128), Expect = 3e-21 Identities = 141/191 (74%), Gaps = 1/191 (1%) Strand=Plus/Plus Query 35547 CCTTT-TGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAAT 35605 ||||| || |||||||| || | ||| ||||| | || ||||||||||| || ||||| Sbjct 301960 CCTTTCTGGATGTTGTAGTCCGACAAAGTTCGGCCATCTTCCAGCTGCTTGCCAGCAAAG 302019 Query 35606 ATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTT 35665 |||| ||||||||||| | |||| || |||||||| |||||| |||| | | Sbjct 302020 ATCAGTCGCTGCTGGTCTGGTGGAATGCCTTCCTTGTCTTGGATCTTGGCTTTCACATTC 302079 Query 35666 GCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACA 35725 | | ||| || | ||||| |||| || |||||||| || ||||| ||||| || Sbjct 302080 TCAATCGTATCTGATGCCTCCACTTCCAAAGTAATCGTTTTGCCTGTCAAGGTTTTGACG 302139 Query 35726 AATATCTGCAT 35736 ||||||||||| Sbjct 302140 AATATCTGCAT 302150 Score = 98.7 bits (108), Expect = 9e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 ||||| || | ||| | || | ||| | ||| ||||| || || || ||||| | Sbjct 302152 CCACCTCGAAGCCTGAGGACGAGATGAAGTGTAGATTCCTTCTGGATATTATAATCAGAG 302211 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 | |||||| | || ||||||||||| || ||||| |||| ||||||||||| | ||| Sbjct 302212 AGGGTTCGGCCATCCTCCAGCTGCTTGCCAGCAAAGATCAGTCGCTGCTGGTCTGGTGGA 302271 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACC 35689 | | |||||||| |||||| |||| | | | | ||| || | |||||| Sbjct 302272 ATTCCTTCCTTGTCTTGGATCTTGGCTTTCACATTCTCAATCGTATCAGATGCTTCCACT 302331 Query 35690 TCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 || | || || || || || |||| ||||||||| || |||||||| Sbjct 302332 TCTAAAGTAATGGTCTTGCCAGTCAGAGTTTTCACGAAAATCTGCAT 302378 Score = 95.1 bits (104), Expect = 1e-14 Identities = 136/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 ||| || || || || ||||| | | |||||| | || ||||||||||| || ||||| Sbjct 297514 CTCTTTCTGGATATTATAATCTGAGAGGGTTCGGCCATCCTCCAGCTGCTTGCCAGCAAA 297573 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 |||| ||||||||||| | |||| || || |||||| |||||| |||| | Sbjct 297574 GATCAGTCGCTGCTGGTCTGGTGGAATGCCTTCTTTGTCCTGGATCTTGGCTTTCACGTT 297633 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | || || | || || |||| || || ||||| || ||||| ||||| || Sbjct 297634 CTCAATTGTATCAGAAGCCTCTACTTCCAGAGTAATGGTTTTTCCTGTCAAGGTTTTGAC 297693 Query 35725 AAATATCTGCAT 35736 |||||||||||| Sbjct 297694 AAATATCTGCAT 297705 Score = 87.8 bits (96), Expect = 2e-12 Identities = 84/108 (78%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 ||| || || |||||||| || | ||| ||||| | || ||||||||||| || ||||| Sbjct 299007 CTCTTTCTGGATGTTGTAGTCTGACAAAGTTCGGCCATCCTCCAGCTGCTTGCCAGCAAA 299066 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTT 35652 |||| ||||||||||| | |||| || ||||||||| |||||| Sbjct 299067 GATCAGTCGCTGCTGGTCTGGTGGAATGCCTTCCTTGTCCTGGATCTT 299114 >seq1183 Length=31732 Score = 89.7 bits (98), Expect = 5e-13 Identities = 138/193 (72%), Gaps = 3/193 (2%) Strand=Plus/Plus Query 35546 TCCTTT-TGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||| || ||||||||||| | ||||| || | || |||| ||||| || ||||| Sbjct 15460 TCCTTTCTGGATGTTGTAATCTGATAAGGTGCGGCCATCTTCCAATTGCTTGCCAGCAAA 15519 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 || | |||||||| || | || | | ||||||||| | ||||| ||| ||| | Sbjct 15520 CATAAGTCGCTGCTGCTCAGGGGGGATACCTTCCTTGTCCTGCAGCTTTTTCTTTAGATT 15579 Query 35665 TGCCACCGTGTC-GCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCA 35723 | | || || ||| | || ||||||| ||||| || || || |||| || |||| Sbjct 15580 CTCAATGGTATCAGCT-GGCTCTACCTCCAGAGTGATGGTCTTCCCTGTCAGGGTCTTCA 15638 Query 35724 CAAATATCTGCAT 35736 |||| |||||||| Sbjct 15639 CAAAAATCTGCAT 15651 Score = 89.7 bits (98), Expect = 5e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 |||||||| | | ||| ||||| || | || || || || ||||||||||| | Sbjct 15653 CCACCACGCAGACGCAATACCAAGTGGAGGGTGGATTCTTTCTGGATGTTGTAATCTGAT 15712 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 ||||| || | || |||| ||||| || ||||| || | |||||||| || | || Sbjct 15713 AAGGTGCGGCCATCTTCCAATTGCTTGCCAGCAAAGATAAGTCGCTGCTGCTCAGGGGGG 15772 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTC-GCTCGATTCCAC 35688 | | ||||||||| | ||||| ||| ||| | | | || || ||| | || || Sbjct 15773 ATACCTTCCTTGTCCTGCAGCTTTTTCTTTAGATTCTCAATGGTATCAGCT-GGCTCTAC 15831 Query 35689 CTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 ||||| ||||| || || || |||| || ||||| || |||||||| Sbjct 15832 CTCCAGAGTGATGGTCTTCCCTGTCAGGGTCTTCACGAAAATCTGCAT 15879 >seq623 Length=111817 Score = 87.8 bits (96), Expect = 2e-12 Identities = 147/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 35528 ACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCC 35587 |||||||| | || || || || ||||||||||| | ||||| || | || ||| Sbjct 107666 ACCAAATGCAGGGTTGATTCTTTCTGGATGTTGTAATCTGATAAGGTACGGCCATCCTCC 107725 Query 35588 AGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATG 35647 | ||||| || ||||| || | ||||||||| | | ||| | | ||||||||| | Sbjct 107726 AATTGCTTGCCAGCAAAGATAAGTCGCTGCTGGCCAGGAGGGATACCTTCCTTGTCCTGG 107785 Query 35648 ATCTTTTGCTTCAGAGTTGCCACCGTGTC-GCTCGATTCCACCTCCACCGTGATCGTTTT 35706 |||||| |||| | | | || || ||| | || ||||||| ||||| || || Sbjct 107786 ATCTTTGCTTTCACGTTCTCAATGGTATCAGCT-GGCTCTACCTCCAGAGTGATGGTCTT 107844 Query 35707 ACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 || |||| || |||||||| |||||||| Sbjct 107845 CCCTGTCAGGGTCTTCACAAAAATCTGCAT 107874 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 450615187162960