Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zootermopsis_20nevadensis_20[genbank_20GCA_5F000696155.1_202014-06- 05] 31,662 sequences; 485,009,472 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq190 136 4e-27 seq23624 132 5e-26 >seq190 Length=1375728 Score = 136 bits (150), Expect = 4e-27 Identities = 155/206 (75%), Gaps = 4/206 (2%) Strand=Plus/Minus Query 117304 AGTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTACCGAATTG 117363 |||||| ||||| | || ||| || | |||||||||||||||||| | ||||| || || Sbjct 359486 AGTGAATATGTATCTAGGGCTGGCCGAATCCTTGCCACCAGCAAGTCTGGTACCAAACTG 359427 Query 117364 TCCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGAC 117423 ||| | |||| || |||||| | ||||||| || ||||| || |||||||||||||| Sbjct 359426 ACCAATAGGCTGCAGGAGGTTGATGTTGTTGCTACCAACAAAATTCTGAGCCAAGTTGAC 359367 Query 117424 AATCGT--ACCTTGGAGGCTCGCCTCACCATGGTGATACGCCGTCTGCTCCGCCACGTAG 117481 |||||| || | ||| | |||||||| ||||| | | || || || || || Sbjct 359366 AATCGTGGACAT--GAGTGACTGTTCACCATGATGATATGATGAATGTTCAGCAACAGAG 359309 Query 117482 CCCGCCAGCTGAGCCACCTTCATGTC 117507 || |||| |||||||||||| || || Sbjct 359308 CCTGCCAACTGAGCCACCTTGATTTC 359283 Score = 127 bits (140), Expect = 2e-24 Identities = 150/203 (74%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 152029 GTGAAGATGTATCGGGAGCTGGCCGCATCCTTGCCACCTGCCAGCCGCGTTCCAAACTGT 152088 ||||| ||||||| | |||||||| |||||||||||| || || | || |||||||| Sbjct 359485 GTGAATATGTATCTAGGGCTGGCCGAATCCTTGCCACCAGCAAGTCTGGTACCAAACTGA 359426 Query 152089 CCAGAGGGCTCGAGGAGGTTGAGGTTGTTGGCGCCCACGAAATTCTGAGCCAAATTCACA 152148 ||| |||| |||||||||| ||||||| || || |||||||||||||| || ||| Sbjct 359425 CCAATAGGCTGCAGGAGGTTGATGTTGTTGCTACCAACAAAATTCTGAGCCAAGTTGACA 359366 Query 152149 ATCGTGCCCTGCAGACTCGCTTCACCGTGGTGATACGCCGTCTGCTCCGCGATGTATCCC 152208 |||||| | || | |||||| || ||||| | | || || || | | || Sbjct 359365 ATCGTGGACATGAGTGACTGTTCACCATGATGATATGATGAATGTTCAGCAACAGAGCCT 359306 Query 152209 GCCAACTGCGCCACCTTCATGTC 152231 |||||||| |||||||| || || Sbjct 359305 GCCAACTGAGCCACCTTGATTTC 359283 >seq23624 Length=462 Score = 132 bits (146), Expect = 5e-26 Identities = 154/206 (75%), Gaps = 4/206 (2%) Strand=Plus/Plus Query 117304 AGTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTACCGAATTG 117363 |||||| ||||| | || ||| || | |||||||||||||||||| | ||||| || || Sbjct 161 AGTGAATATGTATCTAGGGCTGGCCGAATCCTTGCCACCAGCAAGTCTGGTACCAAACTG 220 Query 117364 TCCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGAC 117423 ||| | |||| || |||||| | ||||||| || ||||| || |||||||||||||| Sbjct 221 ACCAATAGGCTGCAGGAGGTTGATGTTGTTGCTACCAACAAAATTCTGAGCCAAGTTGAC 280 Query 117424 AATCGT--ACCTTGGAGGCTCGCCTCACCATGGTGATACGCCGTCTGCTCCGCCACGTAG 117481 ||| || || | ||| | |||||||| ||||| | | || || || || || Sbjct 281 AATTGTGGACAT--GAGTGACTGTTCACCATGATGATATGATGAATGTTCAGCAACAGAG 338 Query 117482 CCCGCCAGCTGAGCCACCTTCATGTC 117507 || |||| |||||||||||| || || Sbjct 339 CCTGCCAACTGAGCCACCTTGATTTC 364 Score = 123 bits (136), Expect = 3e-23 Identities = 149/203 (73%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 152029 GTGAAGATGTATCGGGAGCTGGCCGCATCCTTGCCACCTGCCAGCCGCGTTCCAAACTGT 152088 ||||| ||||||| | |||||||| |||||||||||| || || | || |||||||| Sbjct 162 GTGAATATGTATCTAGGGCTGGCCGAATCCTTGCCACCAGCAAGTCTGGTACCAAACTGA 221 Query 152089 CCAGAGGGCTCGAGGAGGTTGAGGTTGTTGGCGCCCACGAAATTCTGAGCCAAATTCACA 152148 ||| |||| |||||||||| ||||||| || || |||||||||||||| || ||| Sbjct 222 CCAATAGGCTGCAGGAGGTTGATGTTGTTGCTACCAACAAAATTCTGAGCCAAGTTGACA 281 Query 152149 ATCGTGCCCTGCAGACTCGCTTCACCGTGGTGATACGCCGTCTGCTCCGCGATGTATCCC 152208 || ||| | || | |||||| || ||||| | | || || || | | || Sbjct 282 ATTGTGGACATGAGTGACTGTTCACCATGATGATATGATGAATGTTCAGCAACAGAGCCT 341 Query 152209 GCCAACTGCGCCACCTTCATGTC 152231 |||||||| |||||||| || || Sbjct 342 GCCAACTGAGCCACCTTGATTTC 364 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 546999425587600