Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zootermopsis_20nevadensis_20[genbank_20GCA_5F000696155.1_202014-06- 05] 31,662 sequences; 485,009,472 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq950 96.9 2e-15 seq1183 87.8 1e-12 seq623 82.4 5e-11 >seq950 Length=836093 Score = 96.9 bits (106), Expect = 2e-15 Identities = 155/220 (70%), Gaps = 2/220 (1%) Strand=Plus/Plus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 ||||| | ||| | ||||| || ||| || || || ||||||||||| || ||||| Sbjct 297488 AGACGAAGCACAAGGTGGAGTGTAGACTCTTTCTGGATATTATAATCTGAGAGGGTTCGG 297547 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 | || || || || || || ||||| || | ||||| ||||| || || | || || Sbjct 297548 CCATCCTCCAGCTGCTTGCCAGCAAAGATCAGTCGCTGCTGGTCTGGTGGAATGCCTTCT 297607 Query 34609 TTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGT 34667 ||||| |||| || | ||| ||| | |||||| || ||| ||||||| || Sbjct 297608 TTGTCCTGGATC-TTGGCTTTCACGTTCTCAATTGTATCAGAAGCCTCTACTTCCAGAGT 297666 Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATG 34707 || ||||| || || || ||||| ||||| ||||||||| Sbjct 297667 AATGGTTTTTCCTGTCAAGGTTTTGACAAATATCTGCATG 297706 Score = 89.7 bits (98), Expect = 3e-13 Identities = 138/193 (72%), Gaps = 3/193 (2%) Strand=Plus/Plus Query 34517 CCTTT-TGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAAT 34575 ||||| || ||||| || || || | ||||| | ||||| || || || || ||||| Sbjct 301960 CCTTTCTGGATGTTGTAGTCCGACAAAGTTCGGCCATCTTCCAGCTGCTTGCCAGCAAAG 302019 Query 34576 ATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT 34635 || | ||||| ||||| || || | || ||||||||| |||||| | ||| || | Sbjct 302020 ATCAGTCGCTGCTGGTCTGGTGGAATGCCTTCCTTGTCTTGGATCTTG-GCTTTCACATT 302078 Query 34636 AA-AATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCAC 34694 ||| || ||| ||||||||||| || |||||||| || || || ||||| || Sbjct 302079 CTCAATCGTATCTGATGCCTCCACTTCCAAAGTAATCGTTTTGCCTGTCAAGGTTTTGAC 302138 Query 34695 AAAAATCTGCATG 34707 || ||||||||| Sbjct 302139 GAATATCTGCATG 302151 Score = 89.7 bits (98), Expect = 3e-13 Identities = 141/197 (72%), Gaps = 4/197 (2%) Strand=Plus/Plus Query 34516 TCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAAT 34575 ||||| || || |||||||| || || ||||| | || || || || || || ||||| Sbjct 302188 TCCTTCTGGATATTATAATCAGAGAGGGTTCGGCCATCCTCCAGCTGCTTGCCAGCAAAG 302247 Query 34576 ATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT 34635 || | ||||| ||||| || || | ||| ||||||||| |||||| | ||| || | Sbjct 302248 ATCAGTCGCTGCTGGTCTGGTGGAATTCCTTCCTTGTCTTGGATCTTG-GCTTTCACATT 302306 Query 34636 AA-AATTGTGTCTTC-GCTCTCCACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCA 34693 ||| || || ||| |||||||| | || || || || || || | ||||||| Sbjct 302307 CTCAATCGTATCAGATGCT-TCCACTTCTAAAGTAATGGTCTTGCCAGTCAGAGTTTTCA 302365 Query 34694 CAAAAATCTGCATGTTG 34710 | |||||||||||| || Sbjct 302366 CGAAAATCTGCATGATG 302382 >seq1183 Length=31732 Score = 87.8 bits (96), Expect = 1e-12 Identities = 153/221 (69%), Gaps = 4/221 (2%) Strand=Plus/Plus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 |||||||| ||||| ||||| ||| || || || ||||| |||||||| | || || Sbjct 15662 AGACGCAATACCAAGTGGAGGGTGGATTCTTTCTGGATGTTGTAATCTGATAAGGTGCGG 15721 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 | ||||| | ||| || || ||||| || | ||||| || || || || | || ||| Sbjct 15722 CCATCTTCCAATTGCTTGCCAGCAAAGATAAGTCGCTGCTGCTCAGGGGGGATACCTTCC 15781 Query 34609 TTGTCTGTGATCTTTTGTTTTAACGATAA--AATTGTGTCTTCGCTCTCCACTTCCACGG 34666 ||||| | ||||| |||| ||| ||| || || | ||| || |||| | Sbjct 15782 TTGTCCTGCAGCTTTTTCTTTA--GATTCTCAATGGTATCAGCTGGCTCTACCTCCAGAG 15839 Query 34667 TTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATG 34707 | || || || || || | || ||||| |||||||||||| Sbjct 15840 TGATGGTCTTCCCTGTCAGGGTCTTCACGAAAATCTGCATG 15880 >seq623 Length=111817 Score = 82.4 bits (90), Expect = 5e-11 Identities = 157/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || |||| || || | |||||||| || || || || || ||||| |||||||| Sbjct 107648 CCACCTCGGAGGCGAAGAACCAAATGCAGGGTTGATTCTTTCTGGATGTTGTAATCTGAT 107707 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 | || || | || || | ||| || || ||||| || | ||||| ||| | || || Sbjct 107708 AAGGTACGGCCATCCTCCAATTGCTTGCCAGCAAAGATAAGTCGCTGCTGGCCAGGAGGG 107767 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATAA-AATTGTGTCTTCGCTCTCCAC 34658 | || |||||||| ||||||| | ||| ||| | ||| || || | ||| || Sbjct 107768 ATACCTTCCTTGTCCTGGATCTTT-GCTTTCACGTTCTCAATGGTATCAGCTGGCTCTAC 107826 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATG 34707 |||| || || || || || || | || |||||||||||||||||| Sbjct 107827 CTCCAGAGTGATGGTCTTCCCTGTCAGGGTCTTCACAAAAATCTGCATG 107875 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 314608151945246