Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zootermopsis_20nevadensis_20[genbank_20GCA_5F000696155.1_202014-06- 05] 31,662 sequences; 485,009,472 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq70 140 3e-28 seq623 129 5e-25 seq950 122 8e-23 seq1183 120 3e-22 seq352 107 2e-18 >seq70 Length=429657 Score = 140 bits (154), Expect = 3e-28 Identities = 167/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| | ||||| || ||||| || || || | |||||||||||||| ||||| || Sbjct 142350 ATGCAAGTCTTTGTGAAGACTCTCACTGGAAAAACCATTACTCTTGAAGTTGAACCATCT 142409 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | |||| | | |||| ||||||||| ||||| ||||| || || || ||||| Sbjct 142410 GACACCGTTGAAAACTTGAAACGAAAAATTCAGGACAAGGAAGGAATTCCTCCTCATCAA 142469 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || |||||||| | || ||||| |||||||| || | ||| | || ||||||||| Sbjct 142470 CAACGTTTAATTTTTGCTGGCAAGCAATTGGAGGATGGCCGCACCTTATCAGATTACAAC 142529 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGG 27214 || || || || || ||| | || |||||| | || | || ||||| Sbjct 142530 ATCCATAAAGAATCAACCCTGCACTTGGTTCTTCGCCTCCGAGGTGG 142576 >seq623 Length=111817 Score = 129 bits (142), Expect = 5e-25 Identities = 144/191 (75%), Gaps = 1/191 (1%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || ||||| || ||||| || || || | |||| ||||||||||||| |||| Sbjct 110519 ATGCAAATCTTTGTGAAGACTCTCACTGGAAAAACCATTATTCTTGAAGTGGAAACGTCT 110460 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | ||||| | || ||| ||||||||| ||||| ||||| || || || |||||| Sbjct 110459 GACACCATTGAAAACGTTAAAGCAAAAATTCAGGACAAGGAAGGAATTCCTCCTGATCAA 110400 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || |||||||| | || || || || |||||||| || || |||| || ||||| Sbjct 110399 CAACGTTTAATTTTTGCAGGAAAGCAGTTGGAAGATGGTCGTACACTTTCTGACTACAAT 110340 Query 27168 ATTCA-AAAGG 27177 || || ||||| Sbjct 110339 ATACAGAAAGG 110329 Score = 114 bits (126), Expect = 1e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 ||||||||| ||||| || || ||||| || ||| | || ||||| || || || || | Sbjct 107875 CATGCAGATTTTTGTGAAGACCCTGACAGGGAAGACCATCACTCTGGAGGTAGAGCCAGC 107816 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 || | ||||||| || ||| ||| || || ||||| ||||| || || || | || Sbjct 107815 TGATACCATTGAGAACGTGAAAGCAAAGATCCAGGACAAGGAAGGTATCCCTCCTGGCCA 107756 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 ||||| | || | || ||||| |||||||| || | ||| | || |||||||| Sbjct 107755 GCAGCGACTTATCTTTGCTGGCAAGCAATTGGAGGATGGCCGTACCTTATCAGATTACAA 107696 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGG 27214 ||| || || || || ||| | ||||||||| | || | || ||||| Sbjct 107695 CATCCAGAAAGAATCAACCCTGCATTTGGTTCTTCGCCTCCGAGGTGG 107648 >seq950 Length=836093 Score = 122 bits (134), Expect = 8e-23 Identities = 169/237 (71%), Gaps = 0/237 (0%) Strand=Plus/Minus Query 26981 ATACGCCATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGA 27040 |||| ||||||||| || || ||||||||||| |||||| | |||||| | |||||||| Sbjct 302385 ATACATCATGCAGATTTTCGTGAAAACTCTGACTGGCAAGACCATTACTTTAGAAGTGGA 302326 Query 27041 ACCGTCCGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACC 27100 | | || || ||||||||| || ||| || || |||||||| ||||| || ||||| Sbjct 302325 AGCATCTGATACGATTGAGAATGTGAAAGCCAAGATCCAAGACAAGGAAGGAATTCCACC 302266 Query 27101 CGATCAACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGA 27160 || || ||||| | || | || ||||| || |||| || | ||| | || || Sbjct 302265 AGACCAGCAGCGACTGATCTTTGCTGGCAAGCAGCTGGAGGATGGCCGAACCCTCTCTGA 302206 Query 27161 TTACAACATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||| || || || ||||| || || | ||| | || | | | || |||||||| Sbjct 302205 TTATAATATCCAGAAGGAATCTACACTTCATCTCGTCCTCAGGCTTCGAGGTGGCAT 302149 Score = 113 bits (124), Expect = 4e-20 Identities = 143/193 (74%), Gaps = 3/193 (2%) Strand=Plus/Minus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 |||||||||||| || ||||| |||| ||||| | |||||| | |||||||| | || Sbjct 302151 CATGCAGATATTCGTCAAAACCTTGACAGGCAAAACGATTACTTTGGAAGTGGAGGCATC 302092 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 || ||||||||| || ||| || || |||||||| |||||||| ||||| || || Sbjct 302091 AGATACGATTGAGAATGTGAAAGCCAAGATCCAAGACAAGGAAGGCATTCCACCAGACCA 302032 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTT-TCCGATTACA 27165 ||||| | || | || ||||| || ||||||| | ||| | || || || |||| Sbjct 302031 GCAGCGACTGATCTTTGCTGGCAAGCAGCTGGAAGA-TGGCCGAACTTTGTCGGACTACA 301973 Query 27166 ACATTCA-AAAGG 27177 |||| || ||||| Sbjct 301972 ACATCCAGAAAGG 301960 Score = 105 bits (116), Expect = 6e-18 Identities = 142/198 (72%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 ||||||||||||||| ||||| |||| || || | |||||||| ||||| || | || Sbjct 297706 CATGCAGATATTTGTCAAAACCTTGACAGGAAAAACCATTACTCTGGAAGTAGAGGCTTC 297647 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 || | ||||||| || ||| || || || |||||||||||||| ||||| || || Sbjct 297646 TGATACAATTGAGAACGTGAAAGCCAAGATCCAGGACAAAGAAGGCATTCCACCAGACCA 297587 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 ||||| | || | || ||||| || |||| || | ||| | || ||||| || Sbjct 297586 GCAGCGACTGATCTTTGCTGGCAAGCAGCTGGAGGATGGCCGAACCCTCTCAGATTATAA 297527 Query 27167 CATTCAAAAGGAGTCGAC 27184 || || || ||||| || Sbjct 297526 TATCCAGAAAGAGTCTAC 297509 Score = 104 bits (114), Expect = 2e-17 Identities = 116/155 (75%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| ||||| || |||||||| |||||| | || || | ||||| || | || Sbjct 300872 ATGCAGATCTTTGTTAAGACTCTGACAGGCAAGACAATCACATTGGAAGTAGAGGCTTCT 300813 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || ||||||||| || ||| || ||||| ||||||||||| || ||||| |||||| Sbjct 300812 GATACGATTGAGAATGTTAAAGCCAAGATTCAGGACAAAGAAGGAATTCCACCTGATCAA 300753 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGA 27142 ||||| | || | || ||||| || |||| || Sbjct 300752 CAGCGACTGATCTTTGCTGGCAAGCAGCTGGAGGA 300718 >seq1183 Length=31732 Score = 120 bits (132), Expect = 3e-22 Identities = 165/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 ||||||||| || || || || ||||| || ||| | || ||||| || || || || | Sbjct 15880 CATGCAGATTTTCGTGAAGACCCTGACAGGGAAGACCATCACTCTGGAGGTAGAGCCAGC 15821 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 || | ||||||| | || |||| | || ||||| ||||| || || || || || Sbjct 15820 TGATACCATTGAGAATCTAAAGAAAAAGCTGCAGGACAAGGAAGGTATCCCCCCTGAGCA 15761 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 ||||| | || | || ||||| ||||||||||| | ||| | || |||||||| Sbjct 15760 GCAGCGACTTATCTTTGCTGGCAAGCAATTGGAAGATGGCCGCACCTTATCAGATTACAA 15701 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||| || || || || ||| | || ||||| |||||| |||| ||||| || Sbjct 15700 CATCCAGAAAGAATCCACCCTCCACTTGGTATTGCGTCTGCGTGGTGGTAT 15650 Score = 107 bits (118), Expect = 2e-18 Identities = 162/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| ||||| || || ||||| || ||| | || ||||| || || || || | Sbjct 15651 ATGCAGATTTTTGTGAAGACCCTGACAGGGAAGACCATCACTCTGGAGGTAGAGCCAGCT 15592 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | ||||||| | || |||| | || ||||| ||||| || || || || || Sbjct 15591 GATACCATTGAGAATCTAAAGAAAAAGCTGCAGGACAAGGAAGGTATCCCCCCTGAGCAG 15532 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||||| | || | || ||||| ||||||||||| | ||| | || ||||||||| Sbjct 15531 CAGCGACTTATGTTTGCTGGCAAGCAATTGGAAGATGGCCGCACCTTATCAGATTACAAC 15472 Query 27168 ATTCA-AAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGG 27214 || || |||||| || ||| | || |||||| | || | || ||||| Sbjct 15471 ATCCAGAAAGGA-TCAACCCTGCACTTGGTTCTTCGCCTCCGAGGTGG 15425 Score = 84.2 bits (92), Expect = 2e-11 Identities = 136/192 (71%), Gaps = 3/192 (2%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || ||||| |||||||| || || || | |||||||||||| ||||| || Sbjct 17427 ATGCAAATCTTTGTGAAAACTCTCACTGGAAAAACCTGTACTCTTGAAGTTGAACCTTCA 17368 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | ||||| | || |||||| | | | || || ||||| || || | |||||| Sbjct 17367 GACACCATTGAAAACGTGAAACAACATCTAGAGGAAAAGGAAGGAATTCCCTCTGATCAA 17308 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCG-ACCGTTTCCGATTACAA 27166 || || |||| | || || || || ||| |||| | ||| || | || || ||||| Sbjct 17307 CAACGATTAAATTTTGCAGGAAAGCAGTTGAAAGA-TGATCGTACACTCTCTGACTACAA 17249 Query 27167 CATTCA-AAAGG 27177 || || ||||| Sbjct 17248 TATACAGAAAGG 17237 >seq352 Length=269356 Score = 107 bits (118), Expect = 2e-18 Identities = 139/191 (73%), Gaps = 1/191 (1%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || ||||| || ||||| || || || | ||||||||||||||||| ||| Sbjct 29494 ATGCAAATCTTTGTGAAGACTCTCACTGGAAAAACCGTTACTCTTGAAGTGGAAACGTTT 29435 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | ||||| || |||| ||| | | ||||| ||||| || || || |||||| Sbjct 29434 GACACCATTGAAGACGTGAAACGCAAACTCAACGACAAGGAAGGAATTCCCCCTGATCAA 29375 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || |||||||| | || || || || |||||||| || || |||| || ||||| Sbjct 29374 CAACGTTTAATTTTTGCAGGAAAGCAGTTGGAAGATGGTCGTACAATTTCTGACTACAAT 29315 Query 27168 ATTCA-AAAGG 27177 || || ||||| Sbjct 29314 ATACAGAAAGG 29304 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434746270170240