Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zootermopsis_20nevadensis_20[genbank_20GCA_5F000696155.1_202014-06- 05] 31,662 sequences; 485,009,472 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq70 140 2e-28 seq1183 120 2e-22 seq950 102 6e-17 seq583 102 6e-17 seq623 95.1 8e-15 >seq70 Length=429657 Score = 140 bits (154), Expect = 2e-28 Identities = 157/210 (75%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| | || || || || ||||| |||||||| || ||||| |||||||| | | Sbjct 142350 ATGCAAGTCTTTGTGAAGACTCTCACTGGAAAAACCATTACTCTTGAAGTTGAACCATCT 142409 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| ||||||| || |||| ||||||| ||||| ||||| | || || ||||| Sbjct 142410 GACACCGTTGAAAACTTGAAACGAAAAATTCAGGACAAGGAAGGAATTCCTCCTCATCAA 142469 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 || |||||||| ||||| ||||| ||| |||| || | ||||| ||| ||||||||| Sbjct 142470 CAACGTTTAATTTTTGCTGGCAAGCAATTGGAGGATGGCCGCACCTTATCAGATTACAAC 142529 Query 23791 ATACAAAAAGAGTCCACATTACATTTAGTT 23820 || || ||||| || || | || || ||| Sbjct 142530 ATCCATAAAGAATCAACCCTGCACTTGGTT 142559 >seq1183 Length=31732 Score = 120 bits (132), Expect = 2e-22 Identities = 147/198 (74%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||||||||| || ||||| || || || || |||||||| || || || | | Sbjct 15879 ATGCAGATTTTCGTGAAGACCCTGACAGGGAAGACCATCACTCTGGAGGTAGAGCCAGCT 15820 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTG-ACAAAGAAGGTGTACCGCCAGATCA 23729 || || |||| | || ||| ||||| ||| | |||| |||||| | || || || || Sbjct 15819 GATACCATTGAGA-ATCTAAAGAAAAAGCTGCAGGACAAGGAAGGTATCCCCCCTGAGCA 15761 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||||| | || ||||| ||||| ||| ||||||| | ||||| ||| |||||||| Sbjct 15760 GCAGCGACTTATCTTTGCTGGCAAGCAATTGGAAGATGGCCGCACCTTATCAGATTACAA 15701 Query 23790 CATACAAAAAGAGTCCAC 23807 ||| || ||||| ||||| Sbjct 15700 CATCCAGAAAGAATCCAC 15683 Score = 107 bits (118), Expect = 1e-18 Identities = 140/191 (73%), Gaps = 2/191 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||||||||| || || ||||| || || || || |||||||| || || || | | Sbjct 15651 ATGCAGATTTTTGTGAAGACCCTGACAGGGAAGACCATCACTCTGGAGGTAGAGCCAGCT 15592 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTG-ACAAAGAAGGTGTACCGCCAGATCA 23729 || || |||| | || ||| ||||| ||| | |||| |||||| | || || || || Sbjct 15591 GATACCATTGAGA-ATCTAAAGAAAAAGCTGCAGGACAAGGAAGGTATCCCCCCTGAGCA 15533 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||||| | || ||||| ||||| ||| ||||||| | ||||| ||| |||||||| Sbjct 15532 GCAGCGACTTATGTTTGCTGGCAAGCAATTGGAAGATGGCCGCACCTTATCAGATTACAA 15473 Query 23790 CATACAAAAAG 23800 ||| || |||| Sbjct 15472 CATCCAGAAAG 15462 >seq950 Length=836093 Score = 102 bits (112), Expect = 6e-17 Identities = 148/206 (72%), Gaps = 5/206 (2%) Strand=Plus/Minus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 ||||||||| || ||||| || || || || || || ||||| | ||||| || | | Sbjct 300873 AATGCAGATCTTTGTTAAGACTCTGACAGGCAAGACAATCACATTGGAAGTAGAGGCTTC 300814 Query 23670 GGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATC 23728 || || |||| ||| ||||| | || | || ||||||||||| | || || |||| Sbjct 300813 TGATACGATTGAGAATGTTAAAGCCAAGA-TTCAGGACAAAGAAGGAATTCCACCTGATC 300755 Query 23729 AACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACA 23788 ||||||| | || ||||| ||||| || ||||| || | |||||| | ||||||| Sbjct 300754 AACAGCGACTGATCTTTGCTGGCAAGCAGCTGGAGGATGGACGCAC---ACTGGATTACA 300698 Query 23789 ACATACAAAAAGAGTCCACATTACAT 23814 ||| || ||||| || ||| | ||| Sbjct 300697 ACAACCAGAAAGAATCAACACTCCAT 300672 Score = 87.8 bits (96), Expect = 1e-12 Identities = 138/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| || || |||||| | || |||||||| || ||||| ||||| || | | Sbjct 297705 ATGCAGATATTTGTCAAAACCTTGACAGGAAAAACCATTACTCTGGAAGTAGAGGCTTCT 297646 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 || || |||| | | ||| || || ||||||||||| | || ||||| || Sbjct 297645 GATACAATTGAGAACGTGAAAGCCAAGATCCAGGACAAAGAAGGCATTCCACCAGACCAG 297586 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 ||||| | || ||||| ||||| || ||||| || | || || | ||||| || Sbjct 297585 CAGCGACTGATCTTTGCTGGCAAGCAGCTGGAGGATGGCCGAACCCTCTCAGATTATAAT 297526 Query 23791 ATACAAAAAGAGTCCACA 23808 || || |||||||| ||| Sbjct 297525 ATCCAGAAAGAGTCTACA 297508 >seq583 Length=527131 Score = 102 bits (112), Expect = 6e-17 Identities = 136/189 (72%), Gaps = 0/189 (0%) Strand=Plus/Plus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 |||||| |||||||| |||||||| ||||| ||||| || || ||||||||||| | | Sbjct 232858 AATGCAAATTTTCGTAAAAACCCTAACGGGTAAAACTATAACCCTCGAAGTTGAGGCGTC 232917 Query 23670 GGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||| || | |||| | || || ||| || ||||||||| | || || || || Sbjct 232918 GGATACCATAGAAAATGTCAAGGCTAAGATTCAAGATAAAGAAGGTATCCCACCGGACCA 232977 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 |||||| || || ||||| || || ||| | ||||| | ||||| || ||||| || Sbjct 232978 ACAGCGATTGATCTTTGCTGGGAAGCAATTAGAAGATGGTCGCACGTTGTCGGATTATAA 233037 Query 23790 CATACAAAA 23798 || || || Sbjct 233038 TATTCAGAA 233046 >seq623 Length=111817 Score = 95.1 bits (104), Expect = 8e-15 Identities = 147/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||||||||| || || ||||| || || || || |||||||| || || || | | Sbjct 107874 ATGCAGATTTTTGTGAAGACCCTGACAGGGAAGACCATCACTCTGGAGGTAGAGCCAGCT 107815 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 || || |||| | | ||| ||| || ||||| |||||| | || || | || Sbjct 107814 GATACCATTGAGAACGTGAAAGCAAAGATCCAGGACAAGGAAGGTATCCCTCCTGGCCAG 107755 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 ||||| | || ||||| ||||| ||| |||| || | || || ||| ||||||||| Sbjct 107754 CAGCGACTTATCTTTGCTGGCAAGCAATTGGAGGATGGCCGTACCTTATCAGATTACAAC 107695 Query 23791 ATACAAAAAGAGTCCACATTACATTTAGTT 23820 || || ||||| || || | ||||| ||| Sbjct 107694 ATCCAGAAAGAATCAACCCTGCATTTGGTT 107665 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 337879168644296