Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zootermopsis_20nevadensis_20[genbank_20GCA_5F000696155.1_202014-06- 05] 31,662 sequences; 485,009,472 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq623 150 4e-31 seq950 141 2e-28 seq1183 131 4e-25 seq70 129 1e-24 seq583 114 3e-20 seq33 105 2e-17 seq352 89.7 1e-12 >seq623 Length=111817 Score = 150 bits (166), Expect = 4e-31 Identities = 160/209 (77%), Gaps = 4/209 (2%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAA--AGCTCAG 177981 || ||||| ||||| || || ||||| || || ||||| || ||||| || |||| | Sbjct 107871 CAGATTTTTGTGAAGACCCTGACAGGGAAGACCATCACTCTGGAGGTAGAGCCAGCT--G 107814 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 | ||||| |||||||| ||| |||||| |||||||| ||||| |||||||| | ||||| Sbjct 107813 ATACCATTGAGAACGTGAAAGCAAAGATCCAGGACAAGGAAGGTATCCCTCCTGGCCAGC 107754 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | ||||||||||| || || || || | || ||||| | || | | ||||| ||| Sbjct 107753 AGCGACTTATCTTTGCTGGCAAGCAATTGGAGGATGGCCGTACCTTATCAGATTACAACA 107694 Query 178102 TCCAAAAAGAATCAACACTGCATCTTGTT 178130 |||| ||||||||||| |||||| | ||| Sbjct 107693 TCCAGAAAGAATCAACCCTGCATTTGGTT 107665 Score = 134 bits (148), Expect = 3e-26 Identities = 142/187 (76%), Gaps = 0/187 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| || ||||| |||||||| |||||||| || | || || ||||||| || ||| Sbjct 110516 CAAATCTTTGTGAAGACTCTCACTGGAAAAACCATTATTCTTGAAGTGGAAACGTCTGAC 110457 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| || ||||| ||| ||| ||||||||||| |||||||| ||||| || || ||| Sbjct 110456 ACCATTGAAAACGTTAAAGCAAAAATTCAGGACAAGGAAGGAATTCCTCCTGATCAACAA 110397 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | || || || ||||| ||| | |||||||| | || ||| | || || || | Sbjct 110396 CGTTTAATTTTTGCAGGAAAGCAGTTGGAAGATGGTCGTACACTTTCTGACTACAATATA 110337 Query 178104 CAAAAAG 178110 || |||| Sbjct 110336 CAGAAAG 110330 >seq950 Length=836093 Score = 141 bits (156), Expect = 2e-28 Identities = 155/206 (75%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || ||||||||||||||||| || || || || || || | || |||||| || || Sbjct 302375 CAGATTTTCGTGAAAACTCTGACTGGCAAGACCATTACTTTAGAAGTGGAAGCATCTGAT 302316 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || ||||| || ||| ||||| || ||||| |||||||| || || |||||||| Sbjct 302315 ACGATTGAGAATGTGAAAGCCAAGATCCAAGACAAGGAAGGAATTCCACCAGACCAGCAG 302256 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 ||||| ||||| || || || ||||| || ||||| | || || | |||||||| || Sbjct 302255 CGACTGATCTTTGCTGGCAAGCAGCTGGAGGATGGCCGAACCCTCTCTGATTATAATATC 302196 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 || || ||||| ||||| ||||| || Sbjct 302195 CAGAAGGAATCTACACTTCATCTCGT 302170 Score = 138 bits (152), Expect = 3e-27 Identities = 154/206 (75%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || || || ||||| | ||||||||||| || || || || || || || || Sbjct 297702 CAGATATTTGTCAAAACCTTGACAGGAAAAACCATTACTCTGGAAGTAGAGGCTTCTGAT 297643 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || |||||||| ||| ||||| |||||||||||||| || || || |||||||| Sbjct 297642 ACAATTGAGAACGTGAAAGCCAAGATCCAGGACAAAGAAGGCATTCCACCAGACCAGCAG 297583 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 ||||| ||||| || || || ||||| || ||||| | || || | |||||||| || Sbjct 297582 CGACTGATCTTTGCTGGCAAGCAGCTGGAGGATGGCCGAACCCTCTCAGATTATAATATC 297523 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 || ||||| || ||||| || ||||| Sbjct 297522 CAGAAAGAGTCTACACTCCACCTTGT 297497 Score = 131 bits (144), Expect = 4e-25 Identities = 153/206 (74%), Gaps = 3/206 (1%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || || || || ||||| ||||| || || ||||| | || || || || || Sbjct 300869 CAGATCTTTGTTAAGACTCTGACAGGCAAGACAATCACATTGGAAGTAGAGGCTTCTGAT 300810 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || ||||| || ||| ||||||||||||||||||||||| || || || || || Sbjct 300809 ACGATTGAGAATGTTAAAGCCAAGATTCAGGACAAAGAAGGAATTCCACCTGATCAACAG 300750 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 ||||| ||||| || || || ||||| || |||||| | || || ||||| ||| | Sbjct 300749 CGACTGATCTTTGCTGGCAAGCAGCTGGAGGATGGACGCACACT---GGATTACAACAAC 300693 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 || |||||||||||||| ||||| || Sbjct 300692 CAGAAAGAATCAACACTCCATCTGGT 300667 Score = 118 bits (130), Expect = 3e-21 Identities = 112/143 (78%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 177987 ATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGA 178046 || |||||||| ||| ||||| ||||||||||||||||| || || |||||||| ||| Sbjct 297867 ATTGAGAACGTGAAAGCCAAGATCCAGGACAAAGAAGGAATTCCACCAGACCAGCAGCGA 297808 Query 178047 CTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAA 178106 || ||||| || || |||||||| || ||||| | || || | |||||||| |||| Sbjct 297807 CTGATCTTTGCTGGCAAACAGCTGGAGGATGGCCGAACCCTCTCAGATTATAATATCCAG 297748 Query 178107 AAAGAATCAACACTGCATCTTGT 178129 || ||||| ||||| || || || Sbjct 297747 AAGGAATCTACACTTCACCTCGT 297725 >seq1183 Length=31732 Score = 131 bits (144), Expect = 4e-25 Identities = 155/207 (75%), Gaps = 5/207 (2%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAA--AGCTCAG 177981 || ||||||||||| || || ||||| || || ||||| || ||||| || |||| | Sbjct 15876 CAGATTTTCGTGAAGACCCTGACAGGGAAGACCATCACTCTGGAGGTAGAGCCAGCT--G 15819 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 | ||||| ||||| | || ||||| | |||||||| ||||| ||||| || || |||| Sbjct 15818 ATACCATTGAGAATCTAAAGAAAAAGCTGCAGGACAAGGAAGGTATCCCCCCTGAGCAGC 15759 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | ||||||||||| || || || || | |||||||| | || | | ||||| ||| Sbjct 15758 AGCGACTTATCTTTGCTGGCAAGCAATTGGAAGATGGCCGCACCTTATCAGATTACAACA 15699 Query 178102 TCCAAAAAGAATCAACACTGCATCTTG 178128 |||| |||||||| || || || |||| Sbjct 15698 TCCAGAAAGAATCCACCCTCCA-CTTG 15673 Score = 98.7 bits (108), Expect = 2e-15 Identities = 114/154 (74%), Gaps = 0/154 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| || |||||||||||||| |||||||| || || || || ||| |||||| Sbjct 17424 CAAATCTTTGTGAAAACTCTCACTGGAAAAACCTGTACTCTTGAAGTTGAACCTTCAGAC 17365 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| || ||||| |||||| | | |||| || |||||||| || | || || ||| Sbjct 17364 ACCATTGAAAACGTGAAACAACATCTAGAGGAAAAGGAAGGAATTCCCTCTGATCAACAA 17305 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATG 178077 ||| | | || || ||||| ||| | |||||| Sbjct 17304 CGATTAAATTTTGCAGGAAAGCAGTTGAAAGATG 17271 >seq70 Length=429657 Score = 129 bits (142), Expect = 1e-24 Identities = 154/208 (74%), Gaps = 1/208 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||| | || ||||| |||||||| |||||||| || || || || || ||| || ||| Sbjct 142353 CAAGTCTTTGTGAAGACTCTCACTGGAAAAACCATTACTCTTGAAGTTGAACCATCTGAC 142412 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||| | || ||| | |||| ||| ||||||||||| |||||||| ||||| | || ||| Sbjct 142413 ACCGTTGAAAACTTGAAACGAAAAATTCAGGACAAGGAAGGAATTCCTCCTCATCAACAA 142472 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | || || || || || || | || ||||| | || | | ||||| ||| || Sbjct 142473 CGTTTAATTTTTGCTGGCAAGCAATTGGAGGATGGCCGCACCTTATCAGATTACAACATC 142532 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTT 178131 || ||||||||||| ||||| |||| || Sbjct 142533 CATAAAGAATCAACCCTGCA-CTTGGTT 142559 >seq583 Length=527131 Score = 114 bits (126), Expect = 3e-20 Identities = 131/176 (74%), Gaps = 0/176 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||||||||| ||||| || || || ||||| || |||||||| || || || || Sbjct 232862 CAAATTTTCGTAAAAACCCTAACGGGTAAAACTATAACCCTCGAAGTTGAGGCGTCGGAT 232921 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| || || ||||| |||||||| || |||||||| ||||| |||||||| || Sbjct 232922 ACCATAGAAAATGTCAAGGCTAAGATTCAAGATAAAGAAGGTATCCCACCGGACCAACAG 232981 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAA 178099 ||| | ||||| || || || || | |||||||| | || | | |||||||| Sbjct 232982 CGATTGATCTTTGCTGGGAAGCAATTAGAAGATGGTCGCACGTTGTCGGATTATAA 233037 >seq33 Length=49811 Score = 105 bits (116), Expect = 2e-17 Identities = 122/164 (74%), Gaps = 3/164 (2%) Strand=Plus/Plus Query 177966 GAGGTGGAAAGCTCAGACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGA 178025 || |||||| ||||| || || ||||| || ||| |||||||| ||| || |||||| Sbjct 14851 GAAGTGGAAGCATCAGATACGATTGAGAATGTAAAAGCAAAGATTCGGGATAAGGAAGGA 14910 Query 178026 ATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACT 178085 || | |||||||| || ||||| ||||| || || || || || |||||| | ||| Sbjct 14911 ATTCAACCGGACCAACAGCGACTGATCTTTGCTGGCAAGCATCT---AGATGGTCGAACT 14967 Query 178086 CTTGCCGATTATAACGTCCAAAAAGAATCAACACTGCATCTTGT 178129 | | ||||| || ||| |||||||||||||| ||||| || Sbjct 14968 TTGTCAGATTACAAAAACCAGAAAGAATCAACACTCCATCTGGT 15011 >seq352 Length=269356 Score = 89.7 bits (98), Expect = 1e-12 Identities = 102/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || ||||| ||||| || || ||||| || || ||||| || ||||| || | | || Sbjct 26283 CAGATTTTTGTGAAGACCCTGACAGGGAAGACCATCACTCTGGAGGTAGAGACAGCTGAT 26224 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| ||| || || ||||| | |||||||| || || || || || |||||||| Sbjct 26223 ACCATTGAGGCTGTAAAGAAAAAGCTGCAGGACAAGGAGGGCATACCCCCTGACCAGCAG 26164 Query 178044 CGACTTATCTTCGCCGG 178060 ||||||||||| || || Sbjct 26163 CGACTTATCTTTGCTGG 26147 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203242883116428