Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ancylostoma_20ceylanicum_20[genbank_20GCA_5F000688135.1_202014-03- 25] 1,736 sequences; 313,092,710 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq204 96.9 4e-15 seq117 87.8 2e-12 >seq204 Length=107262 Score = 96.9 bits (106), Expect = 4e-15 Identities = 106/141 (75%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 40689 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCAC 40748 |||||| || || || || || ||||| || || || ||||| |||| ||||| ||| | Sbjct 85779 AATGCAGATCTTTGTCAAGACCCTCACTGGAAAGACGATCACACTCGAGGTCGAGGCCTC 85720 Query 40749 CGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 ||||| | | | | |||||| || |||| ||||||||||| ||||| | ||||| Sbjct 85719 CGACACCATTGAGAATGTCAAGGCCAAGATTCAGGACAAAGAGGGTATCCCTCCTGACCA 85660 Query 40809 GCAACGACTCATCTACGCGGG 40829 |||||||||||| | ||| || Sbjct 85659 GCAACGACTCATTTTCGCAGG 85639 Score = 93.3 bits (102), Expect = 4e-14 Identities = 105/141 (74%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 40689 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCAC 40748 ||||||||| || || || || ||||| || || || ||||| |||| ||||| ||| | Sbjct 83390 AATGCAAATTTTTGTCAAGACCCTCACTGGAAAGACGATCACACTCGAGGTCGAGGCCTC 83331 Query 40749 CGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 ||||| | | | | |||||| ||||||| || |||||||| || || | || || Sbjct 83330 CGACACCATTGAGAATGTCAAGGCCAAAATTCAAGATAAAGAGGGTATTCCACCTGATCA 83271 Query 40809 GCAACGACTCATCTACGCGGG 40829 ||||||||| |||| ||| || Sbjct 83270 GCAACGACTAATCTTCGCAGG 83250 Score = 91.5 bits (100), Expect = 2e-13 Identities = 106/143 (74%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| || || || |||||||| |||||||||||||| |||| || || || | Sbjct 84059 ATGCAAATCTTTGTCAAGACGCTCACCGGCAAAACCATCACGCTCGAAGTGGAGGCTTCT 84000 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | ||| | |||| ||| || | ||||| || || ||||| | |||||| Sbjct 83999 GACACCATTGAAAATGTAAAGGCAAAGATCCAGGACAAGGAAGGAATCCCTCCAGACCAG 83940 Query 40810 CAACGACTCATCTACGCGGGCAA 40832 || ||||| |||| ||| || || Sbjct 83939 CAGCGACTAATCTTCGCAGGTAA 83917 Score = 89.7 bits (98), Expect = 5e-13 Identities = 148/211 (70%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 40689 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCAC 40748 |||||| || || ||||| || || || || || || ||||| | || ||||| || | Sbjct 82483 AATGCAGATCTTTGTAAAGACCCTTACTGGGAAGACGATCACGTTAGAAGTCGAGGCGTC 82424 Query 40749 CGACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACC 40807 |||| | | |||| | |||| || |||| ||||| ||||| ||||| | || | Sbjct 82423 AGACACAATTGAGAACG-TGAAGGCCAAGATTCAAGACAAGGAGGGAATCCCTCCTGATC 82365 Query 40808 AGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 40867 |||| | | |||| || || || ||||| || || | ||||| || ||||||| Sbjct 82364 AGCAGAGGTTGATCTTTGCCGGAAAGCAGCTCGAGGATGGCCGCACGCTGTCGGACTACA 82305 Query 40868 ACATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 | |||||||||||| | || || ||||| || Sbjct 82304 ATATCCAGAAGGAGTCAACTCTCCATCTGGT 82274 >seq117 Length=131150 Score = 87.8 bits (96), Expect = 2e-12 Identities = 102/135 (76%), Gaps = 2/135 (1%) Strand=Plus/Minus Query 40689 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCAC 40748 |||||| || ||||| || ||||| ||||| |||||||||||| | || |||||||| | Sbjct 11270 AATGCAGATCTTCGTGAAGACGCTGACGGGAAAAACCATCACCTTGGAGGTCGAAGCTTC 11211 Query 40749 CGACA-GCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACC 40807 |||| || |||| | |||| ||| |||| ||||| || |||||||| | || | Sbjct 11210 GGACACTATTGAGAACG-TAAAGGCAAAGATTCAAGACAAGGAAGGCATCCCACCAGATC 11152 Query 40808 AGCAACGACTCATCT 40822 |||| | ||||||| Sbjct 11151 AGCAGAGGCTCATCT 11137 Score = 87.8 bits (96), Expect = 2e-12 Identities = 102/135 (76%), Gaps = 2/135 (1%) Strand=Plus/Minus Query 40689 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCAC 40748 |||||| || ||||| || ||||| || || || ||||||||| | || ||||||||| | Sbjct 13376 AATGCAGATCTTCGTCAAGACGCTGACTGGAAAGACCATCACCCTGGAGGTCGAAGCCTC 13317 Query 40749 CGACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACC 40807 |||| | | | |||| | |||| ||||| | ||||| || || ||||| | |||| Sbjct 13316 GGACACCATTGAGAACG-TAAAGGCCAAAATCCAGGACAAGGAAGGGATCCCACCAGACC 13258 Query 40808 AGCAACGACTCATCT 40822 ||||||| || |||| Sbjct 13257 AGCAACGCCTTATCT 13243 Score = 87.8 bits (96), Expect = 2e-12 Identities = 99/133 (74%), Gaps = 0/133 (0%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| ||||| || || || ||||| |||||| | || || |||||| | Sbjct 14130 ATGCAGATCTTCGTGAAAACACTTACTGGAAAAACGATCACCCTTGAGGTGGAAGCCTCG 14071 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 || | | ||| | |||| ||||||| ||||||||||| ||||| | || ||| Sbjct 14070 GATACAATTGAAAATGTAAAGGCGAAAATTCAAGACAAAGAGGGAATCCCACCCGATCAG 14011 Query 40810 CAACGACTCATCT 40822 |||||||| |||| Sbjct 14010 CAACGACTTATCT 13998 Score = 84.2 bits (92), Expect = 2e-11 Identities = 101/135 (75%), Gaps = 2/135 (1%) Strand=Plus/Minus Query 40689 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCAC 40748 ||||||||| ||||| || ||||| || || || ||||||||| | || || || || | Sbjct 12319 AATGCAAATCTTCGTGAAGACGCTGACAGGAAAGACCATCACCCTGGAAGTGGAGGCTTC 12260 Query 40749 CGACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACC 40807 |||| | | |||| |||| | |||||| | ||||||||||| || || |||||| Sbjct 12259 GGACACTATCGAGAACG-TCAAAGCAAAAATCCAGGACAAAGAGGGGATTCCACCGGACC 12201 Query 40808 AGCAACGACTCATCT 40822 |||| || || |||| Sbjct 12200 AGCAGCGCCTTATCT 12186 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515208019743360