Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ancylostoma_20ceylanicum_20[genbank_20GCA_5F000688135.1_202014-03- 25] 1,736 sequences; 313,092,710 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq1404 98.7 1e-15 seq1675 91.5 2e-13 seq1595 91.5 2e-13 seq204 91.5 2e-13 seq1544 89.7 6e-13 seq1394 89.7 6e-13 seq1359 89.7 6e-13 seq1338 89.7 6e-13 seq65 89.7 6e-13 seq1483 84.2 3e-11 >seq1404 Length=882024 Score = 98.7 bits (108), Expect = 1e-15 Identities = 72/84 (86%), Gaps = 0/84 (0%) Strand=Plus/Minus Query 60054 ATGAAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACA 60113 ||| |||| |||||| |||| |||||| |||||| |||||| | ||||||||||| | Sbjct 804854 ATGCAAAAACTTCTCCCCGGCCGGGAATTGAACCCGGGTCTCGCACGTGACAGGCGCGGA 804795 Query 60114 TACTCACCACTATACTACCGAGGA 60137 |||||||||||||||||||||||| Sbjct 804794 TACTCACCACTATACTACCGAGGA 804771 >seq1675 Length=229212 Score = 91.5 bits (100), Expect = 2e-13 Identities = 71/85 (84%), Gaps = 0/85 (0%) Strand=Plus/Minus Query 60054 ATGAAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACA 60113 ||| |||| |||||| |||| |||||| |||||| |||||| | ||||||| || | Sbjct 74993 ATGCAAAAGATTCTCCCCGGCCGGGAATTGAACCCGGGTCTCGCATGTGACAGACGCGGA 74934 Query 60114 TACTCACCACTATACTACCGAGGAT 60138 ||||||||||||||||||||||||| Sbjct 74933 TACTCACCACTATACTACCGAGGAT 74909 >seq1595 Length=313547 Score = 91.5 bits (100), Expect = 2e-13 Identities = 71/85 (84%), Gaps = 0/85 (0%) Strand=Plus/Minus Query 60054 ATGAAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACA 60113 ||| |||| |||||| |||| |||||| |||||| |||||| | ||||||| || | Sbjct 151594 ATGCAAAACATTCTCCCCGGCCGGGAATTGAACCCGGGTCTCGCATGTGACAGACGCGGA 151535 Query 60114 TACTCACCACTATACTACCGAGGAT 60138 ||||||||||||||||||||||||| Sbjct 151534 TACTCACCACTATACTACCGAGGAT 151510 >seq204 Length=107262 Score = 91.5 bits (100), Expect = 2e-13 Identities = 106/143 (74%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 43041 TTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTT 43100 ||||| ||||| || |||||||||||||| | || | | ||||||||| ||| ||| Sbjct 83917 TTACCTGCGAAGATTAGTCGCTGCTGGTCTGGAGGGATTCCTTCCTTGTCCTGGATCTTT 83976 Query 43101 TGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTT 43160 || | | | | ||||| | ||||| |||| ||||||||||||||| || Sbjct 83977 GCCTTTACATTTTCAATGGTGTCAGAAGCCTCCACTTCGAGCGTGATGGTTTTGCCGGTG 84036 Query 43161 AGCGTCTTTACAAAGATTTGCAT 43183 |||||||| |||||||||||||| Sbjct 84037 AGCGTCTTGACAAAGATTTGCAT 84059 Score = 86.0 bits (94), Expect = 7e-12 Identities = 104/142 (73%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 43042 TACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTT 43101 ||||||| || || | ||||||||| || | || | | |||||||| |||||| Sbjct 83549 TACCAGCAAAAATCAATCGCTGCTGATCAGGTGGAATTCCTTCCTTGTCTTGGATTTTAG 83608 Query 43102 GTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTA 43161 |||| | | | ||||| || ||||| |||| ||||||||||||||| || | Sbjct 83609 CCTTGACATTTTCGATAGTGTCAGACGCCTCCACTTCGAGCGTGATGGTTTTGCCGGTGA 83668 Query 43162 GCGTCTTTACAAAGATTTGCAT 43183 ||||||| |||||||||||||| Sbjct 83669 GCGTCTTGACAAAGATTTGCAT 83690 >seq1544 Length=382999 Score = 89.7 bits (98), Expect = 6e-13 Identities = 70/84 (83%), Gaps = 0/84 (0%) Strand=Plus/Minus Query 60055 TGAAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACAT 60114 || |||| |||||| |||| |||||| |||||| |||||| | ||||||| || || Sbjct 284779 TGCAAAACATTCTCCCCGGCCGGGAATTGAACCCGGGTCTCGCATGTGACAGACGCGGAT 284720 Query 60115 ACTCACCACTATACTACCGAGGAT 60138 |||||||||||||||||||||||| Sbjct 284719 ACTCACCACTATACTACCGAGGAT 284696 >seq1394 Length=980433 Score = 89.7 bits (98), Expect = 6e-13 Identities = 70/84 (83%), Gaps = 0/84 (0%) Strand=Plus/Minus Query 60055 TGAAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACAT 60114 || |||| |||||| |||| |||||| |||||| |||||| | ||||||| || || Sbjct 793642 TGCAAAAGATTCTCCCCGGCGGGGAATTGAACCCGGGTCTCGCATGTGACAGACGCGGAT 793583 Query 60115 ACTCACCACTATACTACCGAGGAT 60138 |||||||||||||||||||||||| Sbjct 793582 ACTCACCACTATACTACCGAGGAT 793559 Score = 84.2 bits (92), Expect = 3e-11 Identities = 69/84 (82%), Gaps = 0/84 (0%) Strand=Plus/Minus Query 60055 TGAAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACAT 60114 || |||| |||||| |||| |||||| |||||| |||||| | ||||||| || || Sbjct 793531 TGCAAAAGATTCTCCCCGGCCGGGAATTGAACCCGGGTCTCGCATGTGACAGACGCGGAT 793472 Query 60115 ACTCACCACTATACTACCGAGGAT 60138 ||||||||||||||||||||||| Sbjct 793471 TCTCACCACTATACTACCGAGGAT 793448 Score = 84.2 bits (92), Expect = 3e-11 Identities = 69/84 (82%), Gaps = 0/84 (0%) Strand=Plus/Plus Query 60055 TGAAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACAT 60114 || |||| |||||| |||| |||||| ||| || |||||| | ||||||| || || Sbjct 858808 TGCAAAAGATTCTCCCCGGCCGGGAATTGAATCCGGGTCTCGCATGTGACAGACGCGGAT 858867 Query 60115 ACTCACCACTATACTACCGAGGAT 60138 |||||||||||||||||||||||| Sbjct 858868 ACTCACCACTATACTACCGAGGAT 858891 >seq1359 Length=2014153 Score = 89.7 bits (98), Expect = 6e-13 Identities = 70/84 (83%), Gaps = 0/84 (0%) Strand=Plus/Plus Query 60055 TGAAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACAT 60114 || |||| |||||| |||| |||||| |||||| |||||| | ||||||| || || Sbjct 551868 TGCAAAACATTCTCCCCGGCCGGGAATTGAACCCGGGTCTCGCATGTGACAGACGCGGAT 551927 Query 60115 ACTCACCACTATACTACCGAGGAT 60138 |||||||||||||||||||||||| Sbjct 551928 ACTCACCACTATACTACCGAGGAT 551951 >seq1338 Length=4677894 Score = 89.7 bits (98), Expect = 6e-13 Identities = 70/84 (83%), Gaps = 0/84 (0%) Strand=Plus/Plus Query 60055 TGAAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACAT 60114 || |||| |||||| |||| |||||| |||||| |||||| | ||||||| || || Sbjct 4409677 TGCAAAAGATTCTCCCCGGCCGGGAATTGAACCCGGGTCTCGCATGTGACAGACGCGGAT 4409736 Query 60115 ACTCACCACTATACTACCGAGGAT 60138 |||||||||||||||||||||||| Sbjct 4409737 ACTCACCACTATACTACCGAGGAT 4409760 >seq65 Length=156736 Score = 89.7 bits (98), Expect = 6e-13 Identities = 70/84 (83%), Gaps = 0/84 (0%) Strand=Plus/Minus Query 60055 TGAAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACAT 60114 || |||| |||||| |||| |||||| |||||| |||||| | ||||||| || || Sbjct 55519 TGCAAAAGATTCTCCCCGGCCGGGAATTGAACCCGGGTCTCGCATGTGACAGACGCGGAT 55460 Query 60115 ACTCACCACTATACTACCGAGGAT 60138 |||||||||||||||||||||||| Sbjct 55459 ACTCACCACTATACTACCGAGGAT 55436 >seq1483 Length=501755 Score = 84.2 bits (92), Expect = 3e-11 Identities = 63/74 (85%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 60064 TTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCAC 60123 |||||| |||| |||||| |||||| |||||| | ||||||| || ||||||||||| Sbjct 80048 TTCTCCCCGGCCGGGAATTGAACCCGGGTCTCGCATGTGACAGACGCGGATACTCACCAC 79989 Query 60124 TATACTACCGAGGA 60137 |||||||||||||| Sbjct 79988 TATACTACCGAGGA 79975 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571805191558080