Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ancylostoma_20ceylanicum_20[genbank_20GCA_5F000688135.1_202014-03- 25] 1,736 sequences; 313,092,710 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq1383 105 6e-18 seq117 86.0 6e-12 seq204 84.2 2e-11 >seq1383 Length=1249544 Score = 105 bits (116), Expect = 6e-18 Identities = 97/123 (79%), Gaps = 0/123 (0%) Strand=Plus/Plus Query 23450 TCCGCATGCCACGGCTCGAGGTAAACGGCAAACGCGCCCGGTCTCTTATTGCCGCCCTGA 23509 ||||||||||| || || || |||| ||| || || ||||||| ||| ||||| |||||| Sbjct 312260 TCCGCATGCCAAGGTTCCAGATAAATGGCGAAGGCACCCGGTCGCTTGTTGCCACCCTGA 312319 Query 23510 TCGACGTAACGGGCCGTGTTGTTGTACACTCTTAGCATCGGCACGAGACCGTTGGACGCG 23569 || || ||||| || ||||| ||||| || | ||||| || | ||||||||| || | | Sbjct 312320 TCCACATAACGAGCAGTGTTATTGTAAACACGAAGCATGGGAATGAGACCGTTCGAGGTG 312379 Query 23570 CCG 23572 ||| Sbjct 312380 CCG 312382 >seq117 Length=131150 Score = 86.0 bits (94), Expect = 6e-12 Identities = 107/144 (74%), Gaps = 2/144 (1%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || ||||| ||||| ||||| || || || || ||| | || || || | || Sbjct 11639 ATGCAGATCTTCGTCAAGACCCTGACTGGAAAGACCATTACCCTGGAAGTGGAGGCTTCG 11580 Query 31253 GACAGTGTCGAAACGGTCAAA-CAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 |||| | |||| | |||||| || ||| | |||||||||||| | || || || || Sbjct 11579 GACACTATCGAGAACGTCAAAGCAAAGA-TCCAGGACAAGGAAGGGATCCCACCAGATCA 11521 Query 31312 GCAGCGTCTAATATTCGCTGGCAA 31335 ||||||||| || |||||||| || Sbjct 11520 GCAGCGTCTTATCTTCGCTGGTAA 11497 Score = 82.4 bits (90), Expect = 7e-11 Identities = 106/144 (74%), Gaps = 2/144 (1%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || ||||| ||||| ||||| || || || |||||| | || ||||| | || Sbjct 11979 ATGCAGATCTTCGTTAAGACCCTGACTGGAAAGACCATCACCCTGGAAGTTGAGGCTTCG 11920 Query 31253 GACAGTGTCGAAACGGTCAAA-CAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 || | |||| | |||||| || ||| | ||| |||||||| | || || || || Sbjct 11919 GATACCATCGAGAACGTCAAAGCAAAGA-TCCAGGATAAGGAAGGGATCCCACCAGATCA 11861 Query 31312 GCAGCGTCTAATATTCGCTGGCAA 31335 ||||||||| || |||||||| || Sbjct 11860 GCAGCGTCTCATCTTCGCTGGTAA 11837 Score = 82.4 bits (90), Expect = 7e-11 Identities = 102/140 (73%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||| ||||| ||||| |||||||| || || |||||| | || || || | || Sbjct 12318 ATGCAAATCTTCGTGAAGACGCTGACAGGAAAGACCATCACCCTGGAAGTGGAGGCTTCG 12259 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | |||| | |||||| | ||| |||||| || || | || || |||||| Sbjct 12258 GACACTATCGAGAACGTCAAAGCAAAAATCCAGGACAAAGAGGGGATTCCACCGGACCAG 12199 Query 31313 CAGCGTCTAATATTCGCTGG 31332 ||||| || || || || || Sbjct 12198 CAGCGCCTTATCTTTGCCGG 12179 >seq204 Length=107262 Score = 84.2 bits (92), Expect = 2e-11 Identities = 103/141 (73%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 ||||||||| || || ||||| || || |||||||| ||||| |||| || || |||| Sbjct 83691 CATGCAAATCTTTGTCAAGACGCTCACCGGCAAAACCATCACGCTCGAAGTGGAGGCGTC 83632 Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 |||| | |||||| ||||| | ||| ||||||||||| | || || || || Sbjct 83631 TGACACTATCGAAAATGTCAAGGCTAAAATCCAAGACAAGGAAGGAATTCCACCTGATCA 83572 Query 31312 GCAGCGTCTAATATTCGCTGG 31332 |||||| | || || ||||| Sbjct 83571 GCAGCGATTGATTTTTGCTGG 83551 Score = 84.2 bits (92), Expect = 2e-11 Identities = 107/145 (74%), Gaps = 2/145 (1%) Strand=Plus/Minus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 ||||||||| || || ||||| || || |||||||| ||||| |||| || || | || Sbjct 84060 CATGCAAATCTTTGTCAAGACGCTCACCGGCAAAACCATCACGCTCGAAGTGGAGGCTTC 84001 Query 31252 CGACAGTGTCGAAACGGTCAAA-CAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACC 31310 |||| | |||| || || || ||| | |||||||||||| | || || |||| Sbjct 84000 TGACACCATTGAAAATGTAAAGGCAAAGA-TCCAGGACAAGGAAGGAATCCCTCCAGACC 83942 Query 31311 AGCAGCGTCTAATATTCGCTGGCAA 31335 ||||||| ||||| ||||| || || Sbjct 83941 AGCAGCGACTAATCTTCGCAGGTAA 83917 Score = 82.4 bits (90), Expect = 7e-11 Identities = 102/140 (73%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||| || || ||||| || ||||| ||||| |||||| | || || ||| |||| Sbjct 83081 ATGCAAATCTTTGTGAAGACCCTCACAGGAAAAACTATCACCCTGGAGGTCGAAGCGTCT 83022 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| |||| | || ||| | || ||||||||| || | || || |||||| Sbjct 83021 GACACCATCGAGAACGTGAAAGCCAAGATTCAGGACAAGGAGGGGATCCCTCCAGACCAG 82962 Query 31313 CAGCGTCTAATATTCGCTGG 31332 ||||| ||||| || || || Sbjct 82961 CAGCGACTAATCTTTGCAGG 82942 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445756726869120