Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ancylostoma_20ceylanicum_20[genbank_20GCA_5F000688135.1_202014-03- 25] 1,736 sequences; 313,092,710 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq204 134 3e-26 seq117 107 4e-18 >seq204 Length=107262 Score = 134 bits (148), Expect = 3e-26 Identities = 158/214 (74%), Gaps = 0/214 (0%) Strand=Plus/Plus Query 104347 AAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTC 104406 ||| || ||||| | || || || ||||| ||||| ||||| || || || | || || Sbjct 82270 AAGAACCAGATGGAGAGTTGACTCCTTCTGGATATTGTAGTCCGACAGCGTGCGGCCATC 82329 Query 104407 TTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATC 104466 || || || ||||| ||||| || | |||||| ||||||||||| ||||| || || || Sbjct 82330 CTCGAGCTGCTTTCCGGCAAAGATCAACCTCTGCTGATCAGGAGGGATTCCCTCCTTGTC 82389 Query 104467 CTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGT 104526 |||||||| || || || || || | || || | || || |||| || || || Sbjct 82390 TTGAATCTTGGCCTTCACGTTCTCAATTGTGTCTGACGCCTCGACTTCTAACGTGATCGT 82449 Query 104527 CTTACCAGTAAGTGTTTTTACAAATATCTGCATT 104560 ||| |||||||| || |||||||| ||||||||| Sbjct 82450 CTTCCCAGTAAGGGTCTTTACAAAGATCTGCATT 82483 Score = 111 bits (122), Expect = 4e-19 Identities = 109/141 (77%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 104420 CCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCT 104479 || || || ||||| | ||| || || ||||| ||||||||||| ||||| |||||||| Sbjct 82648 CCTGCGAAGATTAGTCGCTGCTGGTCTGGAGGGATTCCTTCTTTGTCCTGGATCTTTGCC 82707 Query 104480 TTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGT 104539 ||||||||||| | ||| || || || ||||| || || || ||||| || || || Sbjct 82708 TTTACATTTTCAATGGTGTCAGAAGCCTCCACCTCAAGCGTGATCGTCTTCCCGGTGAGG 82767 Query 104540 GTTTTTACAAATATCTGCATT 104560 || || ||||| ||||||||| Sbjct 82768 GTCTTCACAAAGATCTGCATT 82788 Score = 102 bits (112), Expect = 2e-16 Identities = 107/141 (76%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 104420 CCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCT 104479 || || ||||| || | || || |||||||| || || ||||| ||||||||||| || Sbjct 85639 CCTGCGAAAATGAGTCGTTGCTGGTCAGGAGGGATACCCTCTTTGTCCTGAATCTTGGCC 85698 Query 104480 TTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGT 104539 || ||||| || | ||| ||| | || ||||| ||||| || ||||| ||||| || Sbjct 85699 TTGACATTCTCAATGGTGTCGGAGGCCTCGACCTCGAGTGTGATCGTCTTTCCAGTGAGG 85758 Query 104540 GTTTTTACAAATATCTGCATT 104560 || || ||||| ||||||||| Sbjct 85759 GTCTTGACAAAGATCTGCATT 85779 Score = 91.5 bits (100), Expect = 3e-13 Identities = 106/143 (74%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 104417 TTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTT 104476 || || || || ||||| | ||| || || ||||| |||||||| || ||||| |||||| Sbjct 83917 TTACCTGCGAAGATTAGTCGCTGCTGGTCTGGAGGGATTCCTTCCTTGTCCTGGATCTTT 83976 Query 104477 GCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTA 104536 || ||||||||||| | ||| || || || || || || || || || || || || Sbjct 83977 GCCTTTACATTTTCAATGGTGTCAGAAGCCTCCACTTCGAGCGTGATGGTTTTGCCGGTG 84036 Query 104537 AGTGTTTTTACAAATATCTGCAT 104559 || || || ||||| || ||||| Sbjct 84037 AGCGTCTTGACAAAGATTTGCAT 84059 Score = 87.8 bits (96), Expect = 4e-12 Identities = 104/141 (74%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 104420 CCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCT 104479 || ||||| ||||| | ||| || || ||||| || || || || ||||||||||| ||| Sbjct 82942 CCTGCAAAGATTAGTCGCTGCTGGTCTGGAGGGATCCCCTCCTTGTCCTGAATCTTGGCT 83001 Query 104480 TTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGT 104539 || || || || | ||| || | ||| ||||| || || ||||| || || || || Sbjct 83002 TTCACGTTCTCGATGGTGTCAGACGCTTCGACCTCCAGGGTGATAGTTTTTCCTGTGAGG 83061 Query 104540 GTTTTTACAAATATCTGCATT 104560 || || ||||| || |||||| Sbjct 83062 GTCTTCACAAAGATTTGCATT 83082 Score = 86.0 bits (94), Expect = 1e-11 Identities = 107/147 (73%), Gaps = 0/147 (0%) Strand=Plus/Plus Query 104417 TTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTT 104476 || || ||||| || | | ||| ||||| ||||| ||||||||||| || || || || Sbjct 85970 TTACCTGCAAAGATCAAGCGCTGCTGATCTGGAGGAATTCCTTCTTTGTCTTGGATTTTA 86029 Query 104477 GCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTA 104536 || || ||||| || | ||| || | || || || || ||||| || || |||||| Sbjct 86030 GCCTTGACATTCTCAATGGTGTCCGATGCCTCGACTTCGAGGGTAATCGTTTTTCCAGTA 86089 Query 104537 AGTGTTTTTACAAATATCTGCATTTTG 104563 || ||||| || || || |||||| || Sbjct 86090 AGCGTTTTAACGAAAATTTGCATTGTG 86116 >seq117 Length=131150 Score = 107 bits (118), Expect = 4e-18 Identities = 110/141 (78%), Gaps = 2/141 (1%) Strand=Plus/Plus Query 104420 CCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCT 104479 |||||||| || || | || ||||| || || ||||| ||||| || ||||| || || Sbjct 13991 CCAGCAAAGATAAGTCGTTGCTGATCGGGTGGGATTCCCTCTTTGTCTTGAATTTTCGCC 14050 Query 104480 TTTACATTTTCTACGGTATCGCTAGG-TTCTACCTCTAGTGTAATAGTCTTACCAGTAAG 104538 ||||||||||| | ||||| | ||| ||| ||||| || || || || || |||||||| Sbjct 14051 TTTACATTTTCAATTGTATC-CGAGGCTTCCACCTCAAGGGTGATCGTTTTTCCAGTAAG 14109 Query 104539 TGTTTTTACAAATATCTGCAT 104559 |||||| || || |||||||| Sbjct 14110 TGTTTTCACGAAGATCTGCAT 14130 Score = 98.7 bits (108), Expect = 2e-15 Identities = 108/144 (75%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 104417 TTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTT 104476 || ||||| || || || | ||| ||||| || || || ||||| |||||||| |||||| Sbjct 11837 TTACCAGCGAAGATGAGACGCTGCTGATCTGGTGGGATCCCTTCCTTATCCTGGATCTTT 11896 Query 104477 GCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTA 104536 ||||| || || || | |||||| || || || || || || || ||||| ||||| Sbjct 11897 GCTTTGACGTTCTCGATGGTATCCGAAGCCTCAACTTCCAGGGTGATGGTCTTTCCAGTC 11956 Query 104537 AGTGTTTTTACAAATATCTGCATT 104560 || || || || || ||||||||| Sbjct 11957 AGGGTCTTAACGAAGATCTGCATT 11980 Score = 89.7 bits (98), Expect = 1e-12 Identities = 106/144 (74%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 104417 TTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTT 104476 || || || || || |||||||| ||||||||||| || ||||| || ||||| ||||| Sbjct 10764 TTACCGGCGAAGATGAGCCTCTGCTGATCAGGAGGAATACCTTCCTTGTCCTGGATCTTA 10823 Query 104477 GCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTA 104536 || || || || || | |||||| || || || || || || || ||||| || || Sbjct 10824 GCCTTCACGTTCTCAATGGTATCAGAAGCCTCGACTTCAAGGGTGATGGTCTTCCCGGTC 10883 Query 104537 AGTGTTTTTACAAATATCTGCATT 104560 | || || || || ||||||||| Sbjct 10884 AAGGTCTTCACGAAAATCTGCATT 10907 Score = 89.7 bits (98), Expect = 1e-12 Identities = 106/144 (74%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 104417 TTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTT 104476 || || ||||| || |||||||| ||||| || || || ||||| || || ||||||||| Sbjct 11127 TTACCGGCAAAGATGAGCCTCTGCTGATCTGGTGGGATGCCTTCCTTGTCTTGAATCTTT 11186 Query 104477 GCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTA 104536 || ||||| || || | || || || ||| ||||| | || || || || || || Sbjct 11187 GCCTTTACGTTCTCAATAGTGTCCGAAGCTTCGACCTCCAAGGTGATGGTTTTTCCCGTC 11246 Query 104537 AGTGTTTTTACAAATATCTGCATT 104560 || || || || || ||||||||| Sbjct 11247 AGCGTCTTCACGAAGATCTGCATT 11270 Score = 89.7 bits (98), Expect = 1e-12 Identities = 106/144 (74%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 104417 TTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTT 104476 || ||||| || || || | ||| ||||| || || || ||||| || ||||| |||||| Sbjct 11497 TTACCAGCGAAGATAAGACGCTGCTGATCTGGTGGGATCCCTTCCTTGTCCTGGATCTTT 11556 Query 104477 GCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTA 104536 ||||| || || || | || || || || || || || ||||| ||||| ||||| Sbjct 11557 GCTTTGACGTTCTCGATAGTGTCCGAAGCCTCCACTTCCAGGGTAATGGTCTTTCCAGTC 11616 Query 104537 AGTGTTTTTACAAATATCTGCATT 104560 || || || || || ||||||||| Sbjct 11617 AGGGTCTTGACGAAGATCTGCATT 11640 Score = 87.8 bits (96), Expect = 4e-12 Identities = 104/141 (74%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 104420 CCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCT 104479 || ||||| || || | ||| ||||| || || ||||| ||||| || || ||||||||| Sbjct 12906 CCGGCAAAGATAAGTCGCTGCTGATCTGGTGGAATTCCCTCTTTGTCTTGGATCTTTGCT 12965 Query 104480 TTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGT 104539 || |||||||| | || || || || || || || || |||||||| || || | | Sbjct 12966 TTCACATTTTCGATTGTGTCTGAAGCCTCCACTTCGAGCGTGATAGTCTTTCCGGTCAAT 13025 Query 104540 GTTTTTACAAATATCTGCATT 104560 || || || || || |||||| Sbjct 13026 GTCTTCACGAAAATTTGCATT 13046 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151372790021088