Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ancylostoma_20ceylanicum_20[genbank_20GCA_5F000688135.1_202014-03- 25] 1,736 sequences; 313,092,710 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq204 118 9e-22 seq117 111 1e-19 >seq204 Length=107262 Score = 118 bits (130), Expect = 9e-22 Identities = 110/140 (79%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| ||||| ||||| | ||||| ||| ||||||| ||||||||||| ||||| Sbjct 83690 ATGCAAATCTTTGTCAAGACGCTCACCGGCAAAACCATCACGCTCGAAGTGGAGGCGTCT 83631 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||||||||| | ||| |||||| ||||| ||||| ||||||||||| || Sbjct 83630 GACACTATCGAAAATGTCAAGGCTAAAATCCAAGACAAGGAAGGAATTCCACCTGATCAG 83571 Query 25119 CAGCGGATTATTTTTGCCGG 25138 ||||| | |||||||| || Sbjct 83570 CAGCGATTGATTTTTGCTGG 83551 Score = 105 bits (116), Expect = 6e-18 Identities = 173/247 (70%), Gaps = 2/247 (1%) Strand=Plus/Minus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 |||||| || ||||||||||| | || || || | ||||| | ||||| ||| |||| Sbjct 82483 AATGCAGATCTTTGTAAAGACCCTTACTGGGAAGACGATCACGTTAGAAGTCGAGGCGTC 82424 Query 25058 TGACACTATCGAGTCACTGAA-GCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACC 25116 ||||| || ||| |||| || || | ||| ||||| || || || || ||||| | Sbjct 82423 AGACACAATTGAGAACGTGAAGGCCAAGATTCA-AGACAAGGAGGGAATCCCTCCTGATC 82365 Query 25117 AACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACA 25176 | ||| || | || |||||||| || || | || |||| ||||| || || |||| Sbjct 82364 AGCAGAGGTTGATCTTTGCCGGAAAGCAGCTCGAGGATGGCCGCACGCTGTCGGACTACA 82305 Query 25177 ATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGGAAATTATTATA 25236 |||| || || || || || || ||| | || || | || | ||||| ||||| | | Sbjct 82304 ATATCCAGAAGGAGTCAACTCTCCATCTGGTTCTTCGTCTCCGTGGAGGCAATTAATTTC 82245 Query 25237 CTATTAA 25243 ||| ||| Sbjct 82244 CTACTAA 82238 Score = 87.8 bits (96), Expect = 2e-12 Identities = 105/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| ||||| ||||| | ||||| ||| ||||||| ||||||||||| | ||| Sbjct 84059 ATGCAAATCTTTGTCAAGACGCTCACCGGCAAAACCATCACGCTCGAAGTGGAGGCTTCT 84000 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| || || | ||| ||| ||| ||||| ||||| || || || ||||| Sbjct 83999 GACACCATTGAAAATGTAAAGGCAAAGATCCAGGACAAGGAAGGAATCCCTCCAGACCAG 83940 Query 25119 CAGCGGATTATTTTTGCCGGCAA 25141 ||||| | || || || || || Sbjct 83939 CAGCGACTAATCTTCGCAGGTAA 83917 >seq117 Length=131150 Score = 111 bits (122), Expect = 1e-19 Identities = 113/145 (78%), Gaps = 8/145 (6%) Strand=Plus/Minus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 ||||||||| || || ||||| |||| || || ||||||| | ||||||||| | || Sbjct 12319 AATGCAAATCTTCGTGAAGACGCTGACAGGAAAGACCATCACCCTGGAAGTGGAGGCTTC 12260 Query 25058 TGACACTATCGAG----TCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTG 25113 |||||||||||| ||| ||||||||| || |||||||| ||||||||||| | Sbjct 12259 GGACACTATCGAGAACGTCA---AAGCAAAAATCCAG-GACAAAGAGGGGATTCCACCGG 12204 Query 25114 ACCAACAGCGGATTATTTTTGCCGG 25138 |||| ||||| |||| |||||||| Sbjct 12203 ACCAGCAGCGCCTTATCTTTGCCGG 12179 Score = 102 bits (112), Expect = 7e-17 Identities = 107/141 (76%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 ||||||||| || || ||||| |||||||| || | ||||| ||||||||||| | || Sbjct 13046 AATGCAAATTTTCGTGAAGACATTGACCGGAAAGACTATCACGCTCGAAGTGGAGGCTTC 12987 Query 25058 TGACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 ||||| ||||| |||| ||| ||| |||||||| || |||||||| || || Sbjct 12986 AGACACAATCGAAAATGTGAAAGCAAAGATCCAAGACAAAGAGGGAATTCCACCAGATCA 12927 Query 25118 ACAGCGGATTATTTTTGCCGG 25138 ||||| |||| |||||||| Sbjct 12926 GCAGCGACTTATCTTTGCCGG 12906 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433318831862840