Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ancylostoma_20ceylanicum_20[genbank_20GCA_5F000688135.1_202014-03- 25] 1,736 sequences; 313,092,710 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq117 154 3e-32 seq204 149 1e-30 seq1338 100 5e-16 seq1512 86.0 1e-11 seq1459 86.0 1e-11 seq1373 86.0 1e-11 seq1350 86.0 1e-11 >seq117 Length=131150 Score = 154 bits (170), Expect = 3e-32 Identities = 121/145 (83%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 68318 CTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTT 68377 ||| ||||| || ||||| || || || || ||||| ||||||||||||||||||||||| Sbjct 11126 CTTACCGGCAAAGATGAGCCTCTGCTGATCTGGTGGGATGCCTTCCTTGTCTTGAATCTT 11185 Query 68378 TGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGT 68437 |||||| ||| ||| || ||||| | | ||| || ||||||||||||||||||||||| Sbjct 11186 TGCCTTTACGTTCTCAATAGTGTCCGAAGCTTCGACCTCCAAGGTGATGGTTTTTCCCGT 11245 Query 68438 GAGGGTCTTGACGAATATCTGCATT 68462 || ||||| ||||| ||||||||| Sbjct 11246 CAGCGTCTTCACGAAGATCTGCATT 11270 Score = 127 bits (140), Expect = 4e-24 Identities = 115/145 (79%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 68318 CTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTT 68377 ||| || ||||| || || | || || || ||||| || ||||||||||| || ||||| Sbjct 11496 CTTACCAGCGAAGATAAGACGCTGCTGATCTGGTGGGATCCCTTCCTTGTCCTGGATCTT 11555 Query 68378 TGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGT 68437 ||| |||||| |||||| ||||| | | || ||||||| ||| ||||| ||||| || Sbjct 11556 TGCTTTGACGTTCTCGATAGTGTCCGAAGCCTCCACTTCCAGGGTAATGGTCTTTCCAGT 11615 Query 68438 GAGGGTCTTGACGAATATCTGCATT 68462 |||||||||||||| ||||||||| Sbjct 11616 CAGGGTCTTGACGAAGATCTGCATT 11640 Score = 127 bits (140), Expect = 4e-24 Identities = 115/145 (79%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 68318 CTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTT 68377 ||| ||||| || || || | ||| ||||| ||||| || ||||||||||| || || || Sbjct 13232 CTTACCGGCAAAGATAAGGCGTTGCTGGTCTGGTGGGATCCCTTCCTTGTCCTGGATTTT 13291 Query 68378 TGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGT 68437 ||||| ||| ||| |||||||| | | ||| || |||| ||||||||| ||||| || Sbjct 13292 GGCCTTTACGTTCTCAATGGTGTCCGAGGCTTCGACCTCCAGGGTGATGGTCTTTCCAGT 13351 Query 68438 GAGGGTCTTGACGAATATCTGCATT 68462 || ||||||||||| ||||||||| Sbjct 13352 CAGCGTCTTGACGAAGATCTGCATT 13376 Score = 118 bits (130), Expect = 2e-21 Identities = 113/145 (78%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 68318 CTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTT 68377 ||| |||||||| ||||| || || || || || ||||| ||||||||||| || ||||| Sbjct 10763 CTTACCGGCGAAGATGAGCCTCTGCTGATCAGGAGGAATACCTTCCTTGTCCTGGATCTT 10822 Query 68378 TGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGT 68437 ||||| ||| ||| ||||| || | | || ||||| | ||||||||| || || || Sbjct 10823 AGCCTTCACGTTCTCAATGGTATCAGAAGCCTCGACTTCAAGGGTGATGGTCTTCCCGGT 10882 Query 68438 GAGGGTCTTGACGAATATCTGCATT 68462 | |||||| ||||| ||||||||| Sbjct 10883 CAAGGTCTTCACGAAAATCTGCATT 10907 Score = 91.5 bits (100), Expect = 3e-13 Identities = 104/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 68322 CCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCC 68381 || || || || |||| ||| || |||||||| || || || ||||||||||| || ||| Sbjct 13991 CCAGCAAAGATAAGTCGTTGCTGATCGGGTGGGATTCCCTCTTTGTCTTGAATTTTCGCC 14050 Query 68382 TTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGG 68441 || || || || || || | | ||| || || | |||||| |||||||| || || Sbjct 14051 TTTACATTTTCAATTGTATCCGAGGCTTCCACCTCAAGGGTGATCGTTTTTCCAGTAAGT 14110 Query 68442 GTCTTGACGAATATCTGCAT 68461 || || ||||| |||||||| Sbjct 14111 GTTTTCACGAAGATCTGCAT 14130 >seq204 Length=107262 Score = 149 bits (164), Expect = 1e-30 Identities = 174/235 (74%), Gaps = 0/235 (0%) Strand=Plus/Plus Query 68228 TTAATTTCCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATA 68287 |||||| ||||| || || || | |||| || || || ||||| || ||||| || || Sbjct 82249 TTAATTGCCTCCACGGAGACGAAGAACCAGATGGAGAGTTGACTCCTTCTGGATATTGTA 82308 Query 68288 ATCGGAGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTC 68347 || || || || | ||||| || | |||||| ||||| || || | || || || || Sbjct 82309 GTCCGACAGCGTGCGGCCATCCTCGAGCTGCTTTCCGGCAAAGATCAACCTCTGCTGATC 82368 Query 68348 GGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGA 68407 || || || || ||||||||||||||||| ||||| ||| ||| || ||||||| | Sbjct 82369 AGGAGGGATTCCCTCCTTGTCTTGAATCTTGGCCTTCACGTTCTCAATTGTGTCTGACGC 82428 Query 68408 TTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCATT 68462 || ||||| || ||||| || || || || |||||||| || || ||||||||| Sbjct 82429 CTCGACTTCTAACGTGATCGTCTTCCCAGTAAGGGTCTTTACAAAGATCTGCATT 82483 Score = 114 bits (126), Expect = 2e-20 Identities = 110/141 (78%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 68322 CCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCC 68381 || || || || |||| || ||||| || || || || |||||||| |||||||| || Sbjct 82942 CCTGCAAAGATTAGTCGCTGCTGGTCTGGAGGGATCCCCTCCTTGTCCTGAATCTTGGCT 83001 Query 68382 TTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGG 68441 || ||| |||||||||||| | | ||| || |||| |||||| |||||||| |||||| Sbjct 83002 TTCACGTTCTCGATGGTGTCAGACGCTTCGACCTCCAGGGTGATAGTTTTTCCTGTGAGG 83061 Query 68442 GTCTTGACGAATATCTGCATT 68462 ||||| || || || |||||| Sbjct 83062 GTCTTCACAAAGATTTGCATT 83082 Score = 114 bits (126), Expect = 2e-20 Identities = 110/141 (78%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 68322 CCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCC 68381 || ||||| ||||||| ||| ||||| || || || || || ||||| |||||||| ||| Sbjct 85639 CCTGCGAAAATGAGTCGTTGCTGGTCAGGAGGGATACCCTCTTTGTCCTGAATCTTGGCC 85698 Query 68382 TTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGG 68441 ||||| ||| |||||||| | | || || || | ||||| || ||||| |||||| Sbjct 85699 TTGACATTCTCAATGGTGTCGGAGGCCTCGACCTCGAGTGTGATCGTCTTTCCAGTGAGG 85758 Query 68442 GTCTTGACGAATATCTGCATT 68462 |||||||| || ||||||||| Sbjct 85759 GTCTTGACAAAGATCTGCATT 85779 Score = 105 bits (116), Expect = 1e-17 Identities = 108/141 (77%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 68322 CCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCC 68381 || ||||| || |||| ||| || || |||||||| || || || |||||||| || ||| Sbjct 83250 CCTGCGAAGATTAGTCGTTGCTGATCAGGTGGAATACCCTCTTTATCTTGAATTTTGGCC 83309 Query 68382 TTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGG 68441 ||||| ||| |||||||| | | || || || | ||||| || ||||| |||||| Sbjct 83310 TTGACATTCTCAATGGTGTCGGAGGCCTCGACCTCGAGTGTGATCGTCTTTCCAGTGAGG 83369 Query 68442 GTCTTGACGAATATCTGCATT 68462 |||||||| || || |||||| Sbjct 83370 GTCTTGACAAAAATTTGCATT 83390 Score = 105 bits (116), Expect = 1e-17 Identities = 109/143 (76%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 68319 TTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTT 68378 || || ||||| || |||| || ||||| || || || ||||||||||| || |||||| Sbjct 83917 TTACCTGCGAAGATTAGTCGCTGCTGGTCTGGAGGGATTCCTTCCTTGTCCTGGATCTTT 83976 Query 68379 GCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTG 68438 ||||| || || |||||||| | | || ||||| | ||||||||||| || ||| Sbjct 83977 GCCTTTACATTTTCAATGGTGTCAGAAGCCTCCACTTCGAGCGTGATGGTTTTGCCGGTG 84036 Query 68439 AGGGTCTTGACGAATATCTGCAT 68461 || |||||||| || || ||||| Sbjct 84037 AGCGTCTTGACAAAGATTTGCAT 84059 Score = 100 bits (110), Expect = 5e-16 Identities = 106/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 68322 CCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCC 68381 || || || || | || || || || |||||||| |||||||||||||| || || ||| Sbjct 83551 CCAGCAAAAATCAATCGCTGCTGATCAGGTGGAATTCCTTCCTTGTCTTGGATTTTAGCC 83610 Query 68382 TTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGG 68441 ||||| ||||| ||||| | | || ||||| | ||||||||||| || ||||| Sbjct 83611 TTGACATTTTCGATAGTGTCAGACGCCTCCACTTCGAGCGTGATGGTTTTGCCGGTGAGC 83670 Query 68442 GTCTTGACGAATATCTGCAT 68461 |||||||| || || ||||| Sbjct 83671 GTCTTGACAAAGATTTGCAT 83690 Score = 93.3 bits (102), Expect = 8e-14 Identities = 105/141 (74%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 68322 CCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCC 68381 || ||||| || |||| || ||||| || || || ||||| ||||| || ||||||||| Sbjct 82648 CCTGCGAAGATTAGTCGCTGCTGGTCTGGAGGGATTCCTTCTTTGTCCTGGATCTTTGCC 82707 Query 68382 TTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGG 68441 || || || |||||||| | | || || || | ||||| || || || |||||| Sbjct 82708 TTTACATTTTCAATGGTGTCAGAAGCCTCCACCTCAAGCGTGATCGTCTTCCCGGTGAGG 82767 Query 68442 GTCTTGACGAATATCTGCATT 68462 ||||| || || ||||||||| Sbjct 82768 GTCTTCACAAAGATCTGCATT 82788 >seq1338 Length=4677894 Score = 100 bits (110), Expect = 5e-16 Identities = 106/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 68322 CCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCC 68381 || ||||| ||||| | || || || ||||| || || ||||||||||| ||||| ||| Sbjct 229760 CCAGCGAAGATGAGACGCTGCTGATCAGGTGGGATTCCCTCCTTGTCTTGGATCTTGGCC 229701 Query 68382 TTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGG 68441 || || |||||| ||||| | | ||| || || | ||||| || || |||||||| Sbjct 229700 TTCACATTCTCGATCGTGTCCGAGGCTTCAACCTCGAGCGTGATTGTCTTCCCCGTGAGA 229641 Query 68442 GTCTTGACGAATATCTGCAT 68461 ||||| ||||| || ||||| Sbjct 229640 GTCTTCACGAAGATTTGCAT 229621 >seq1512 Length=435709 Score = 86.0 bits (94), Expect = 1e-11 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 84456 GCCCGGTTAGCTCAGTCGGCAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 84515 ||||||||||||||||||| ||||| | || ||||||| || | |||| |||||||||| Sbjct 60298 GCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGCTGTCGCGGGTTCGAGC 60357 Query 84516 CCCACATCGGGC 84527 ||| |||||||| Sbjct 60358 CCCGCATCGGGC 60369 >seq1459 Length=579274 Score = 86.0 bits (94), Expect = 1e-11 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 84456 GCCCGGTTAGCTCAGTCGGCAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 84515 ||||||||||||||||||| ||||| | || ||||||| || | |||| |||||||||| Sbjct 72764 GCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGCTGTCGCGGGTTCGAGC 72823 Query 84516 CCCACATCGGGC 84527 ||| |||||||| Sbjct 72824 CCCGCATCGGGC 72835 >seq1373 Length=1489643 Score = 86.0 bits (94), Expect = 1e-11 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 84456 GCCCGGTTAGCTCAGTCGGCAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 84515 ||||||||||||||||||| ||||| | || ||||||| || | |||| |||||||||| Sbjct 617259 GCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGCTGTCGCGGGTTCGAGC 617318 Query 84516 CCCACATCGGGC 84527 ||| |||||||| Sbjct 617319 CCCGCATCGGGC 617330 >seq1350 Length=2768065 Score = 86.0 bits (94), Expect = 1e-11 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 84456 GCCCGGTTAGCTCAGTCGGCAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 84515 ||||||||||||||||||| ||||| | || ||||||| || | |||| |||||||||| Sbjct 2166378 GCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGCTGTCGCGGGTTCGAGC 2166437 Query 84516 CCCACATCGGGC 84527 ||| |||||||| Sbjct 2166438 CCCGCATCGGGC 2166449 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921602400793920