Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ancylostoma_20ceylanicum_20[genbank_20GCA_5F000688135.1_202014-03- 25] 1,736 sequences; 313,092,710 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq204 123 6e-23 seq117 111 4e-19 seq1338 104 6e-17 >seq204 Length=107262 Score = 123 bits (136), Expect = 6e-23 Identities = 164/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 || || ||||| | ||| || ||||| | || || || |||||||| ||||| | Sbjct 82256 CCTCCACGGAGACGAAGAACCAGATGGAGAGTTGACTCCTTCTGGATATTGTAGTCCGAC 82315 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 |||||||| || || || | || ||||| || ||||||| | ||| ||| | ||| Sbjct 82316 AGCGTGCGGCCATCCTCGAGCTGCTTTCCGGCAAAGATCAACCTCTGCTGATCAGGAGGG 82375 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 ||||| || || || || || || || |||||||| || || | || || || ||| Sbjct 82376 ATTCCCTCCTTGTCTTGAATCTTGGCCTTCACGTTCTCAATTGTGTCTGACGCCTCGACT 82435 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATT 288474 || | ||||||||||||||| || || ||||| || || ||||||||| Sbjct 82436 TCTAACGTGATCGTCTTCCCAGTAAGGGTCTTTACAAAGATCTGCATT 82483 Score = 104 bits (114), Expect = 6e-17 Identities = 110/144 (76%), Gaps = 6/144 (4%) Strand=Plus/Plus Query 288334 CCTGCGAAGATCAGACGCTGTTGAGAATCT---GGGATTCCTTCTTTATCCTGGATTTTC 288390 ||||||||||| || ||||| || ||| |||||||||||||| |||||||| || Sbjct 82648 CCTGCGAAGATTAGTCGCTGCTG---GTCTGGAGGGATTCCTTCTTTGTCCTGGATCTTT 82704 Query 288391 GCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTC 288450 || || || ||||| || | || | || || || |||||||||||||||||||| Sbjct 82705 GCCTTTACATTTTCAATGGTGTCAGAAGCCTCCACCTCAAGCGTGATCGTCTTCCCGGTG 82764 Query 288451 AGAGTCTTGACGAATATCTGCATT 288474 || ||||| || || ||||||||| Sbjct 82765 AGGGTCTTCACAAAGATCTGCATT 82788 Score = 95.1 bits (104), Expect = 3e-14 Identities = 105/140 (75%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 288334 CCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCT 288393 || || || |||| ||||| ||| | ||| |||||||| || || |||||||| || Sbjct 83551 CCAGCAAAAATCAATCGCTGCTGATCAGGTGGAATTCCTTCCTTGTCTTGGATTTTAGCC 83610 Query 288394 TTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGA 288453 || || ||||| |||| || || || |||||||||||||| || || ||||| || Sbjct 83611 TTGACATTTTCGATAGTGTCAGACGCCTCCACTTCGAGCGTGATGGTTTTGCCGGTGAGC 83670 Query 288454 GTCTTGACGAATATCTGCAT 288473 |||||||| || || ||||| Sbjct 83671 GTCTTGACAAAGATTTGCAT 83690 Score = 93.3 bits (102), Expect = 1e-13 Identities = 109/146 (75%), Gaps = 6/146 (4%) Strand=Plus/Plus Query 288331 TTTCCTGCGAAGATCAGACGCTGTTGAGAATCT---GGGATTCCTTCTTTATCCTGGATT 288387 || ||||||||||| || ||||| || ||| ||||||||||| || |||||||| Sbjct 83917 TTACCTGCGAAGATTAGTCGCTGCTG---GTCTGGAGGGATTCCTTCCTTGTCCTGGATC 83973 Query 288388 TTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCG 288447 || || || || ||||| || | || | || |||||||||||||| || || ||| Sbjct 83974 TTTGCCTTTACATTTTCAATGGTGTCAGAAGCCTCCACTTCGAGCGTGATGGTTTTGCCG 84033 Query 288448 GTCAGAGTCTTGACGAATATCTGCAT 288473 || || |||||||| || || ||||| Sbjct 84034 GTGAGCGTCTTGACAAAGATTTGCAT 84059 Score = 87.8 bits (96), Expect = 4e-12 Identities = 104/141 (74%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 288334 CCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCT 288393 ||||||||||| || || || ||| | ||| || || |||||||| || ||||| || Sbjct 83250 CCTGCGAAGATTAGTCGTTGCTGATCAGGTGGAATACCCTCTTTATCTTGAATTTTGGCC 83309 Query 288394 TTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGA 288453 || || || || || | ||| | || || ||||| ||||||||||| || || || Sbjct 83310 TTGACATTCTCAATGGTGTCGGAGGCCTCGACCTCGAGTGTGATCGTCTTTCCAGTGAGG 83369 Query 288454 GTCTTGACGAATATCTGCATT 288474 |||||||| || || |||||| Sbjct 83370 GTCTTGACAAAAATTTGCATT 83390 >seq117 Length=131150 Score = 111 bits (122), Expect = 4e-19 Identities = 111/144 (77%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 288331 TTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTC 288390 || || |||||||| |||||||| ||| |||||| ||||| ||||||||||| || Sbjct 11837 TTACCAGCGAAGATGAGACGCTGCTGATCTGGTGGGATCCCTTCCTTATCCTGGATCTTT 11896 Query 288391 GCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTC 288450 ||||| ||||| || || | ||| | || ||||| || ||||| ||||| || ||| Sbjct 11897 GCTTTGACGTTCTCGATGGTATCCGAAGCCTCAACTTCCAGGGTGATGGTCTTTCCAGTC 11956 Query 288451 AGAGTCTTGACGAATATCTGCATT 288474 || ||||| ||||| ||||||||| Sbjct 11957 AGGGTCTTAACGAAGATCTGCATT 11980 Score = 107 bits (118), Expect = 5e-18 Identities = 110/144 (76%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 288331 TTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTC 288390 || || |||||||| |||||||| ||| |||||| ||||| || |||||||| || Sbjct 11497 TTACCAGCGAAGATAAGACGCTGCTGATCTGGTGGGATCCCTTCCTTGTCCTGGATCTTT 11556 Query 288391 GCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTC 288450 ||||| ||||| || |||| || | || ||||| || || || ||||| || ||| Sbjct 11557 GCTTTGACGTTCTCGATAGTGTCCGAAGCCTCCACTTCCAGGGTAATGGTCTTTCCAGTC 11616 Query 288451 AGAGTCTTGACGAATATCTGCATT 288474 || ||||||||||| ||||||||| Sbjct 11617 AGGGTCTTGACGAAGATCTGCATT 11640 Score = 98.7 bits (108), Expect = 2e-15 Identities = 108/144 (75%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 288331 TTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTC 288390 || || |||||||| || | ||| ||| | || || ||||| || |||||||| || Sbjct 10764 TTACCGGCGAAGATGAGCCTCTGCTGATCAGGAGGAATACCTTCCTTGTCCTGGATCTTA 10823 Query 288391 GCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTC 288450 || |||||||| || || | ||| | || ||||| || ||||| |||||||||||| Sbjct 10824 GCCTTCACGTTCTCAATGGTATCAGAAGCCTCGACTTCAAGGGTGATGGTCTTCCCGGTC 10883 Query 288451 AGAGTCTTGACGAATATCTGCATT 288474 | ||||| ||||| ||||||||| Sbjct 10884 AAGGTCTTCACGAAAATCTGCATT 10907 Score = 96.9 bits (106), Expect = 8e-15 Identities = 106/141 (75%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 288334 CCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCT 288393 || |||||||| ||||| || ||| |||||| || || ||||| ||||| || ||| Sbjct 12503 CCAGCGAAGATGAGACGTTGCTGATCGGGTGGGATGCCCTCCTTATCTTGGATCTTGGCT 12562 Query 288394 TTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGA 288453 |||||||| || || | ||| | || || || || ||||| ||||| || ||||| Sbjct 12563 TTCACGTTCTCGATTGTATCTGAAGCCTCAACCTCCAGAGTGATGGTCTTTCCTGTCAGC 12622 Query 288454 GTCTTGACGAATATCTGCATT 288474 ||||| ||||| ||||||||| Sbjct 12623 GTCTTCACGAAGATCTGCATT 12643 Score = 96.9 bits (106), Expect = 8e-15 Identities = 106/141 (75%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 288334 CCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCT 288393 || || ||||| || ||||| ||| ||| ||||| ||||| || ||||| || ||| Sbjct 12906 CCGGCAAAGATAAGTCGCTGCTGATCTGGTGGAATTCCCTCTTTGTCTTGGATCTTTGCT 12965 Query 288394 TTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGA 288453 ||||| ||||| || | || | || |||||||||||||| ||||| ||||||| Sbjct 12966 TTCACATTTTCGATTGTGTCTGAAGCCTCCACTTCGAGCGTGATAGTCTTTCCGGTCAAT 13025 Query 288454 GTCTTGACGAATATCTGCATT 288474 ||||| ||||| || |||||| Sbjct 13026 GTCTTCACGAAAATTTGCATT 13046 Score = 89.7 bits (98), Expect = 1e-12 Identities = 87/112 (78%), Gaps = 0/112 (0%) Strand=Plus/Plus Query 288363 TGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTC 288422 |||||| ||||| || ||||||||||| || || ||||| || || | || | ||| Sbjct 13265 TGGGATCCCTTCCTTGTCCTGGATTTTGGCCTTTACGTTCTCAATGGTGTCCGAGGCTTC 13324 Query 288423 TACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATT 288474 || || || ||||| ||||| || ||||| ||||||||||| ||||||||| Sbjct 13325 GACCTCCAGGGTGATGGTCTTTCCAGTCAGCGTCTTGACGAAGATCTGCATT 13376 Score = 87.8 bits (96), Expect = 4e-12 Identities = 104/141 (74%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 288334 CCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCT 288393 || || ||||| || ||||| || ||| || || ||||| ||||||||||| ||| Sbjct 12179 CCGGCAAAGATAAGGCGCTGCTGGTCCGGTGGAATCCCCTCTTTGTCCTGGATTTTTGCT 12238 Query 288394 TTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGA 288453 || ||||| || |||| || | || ||||| || ||||| ||||| || ||||| Sbjct 12239 TTGACGTTCTCGATAGTGTCCGAAGCCTCCACTTCCAGGGTGATGGTCTTTCCTGTCAGC 12298 Query 288454 GTCTTGACGAATATCTGCATT 288474 ||||| ||||| || |||||| Sbjct 12299 GTCTTCACGAAGATTTGCATT 12319 >seq1338 Length=4677894 Score = 104 bits (114), Expect = 6e-17 Identities = 107/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 288334 CCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCT 288393 || |||||||| |||||||| ||| | ||||||||| || || || ||||| || || Sbjct 229760 CCAGCGAAGATGAGACGCTGCTGATCAGGTGGGATTCCCTCCTTGTCTTGGATCTTGGCC 229701 Query 288394 TTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGA 288453 ||||| || || || | || | ||| || ||||||||||| |||||||| || ||| Sbjct 229700 TTCACATTCTCGATCGTGTCCGAGGCTTCAACCTCGAGCGTGATTGTCTTCCCCGTGAGA 229641 Query 288454 GTCTTGACGAATATCTGCAT 288473 ||||| ||||| || ||||| Sbjct 229640 GTCTTCACGAAGATTTGCAT 229621 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179628161537008