Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ancylostoma_20ceylanicum_20[genbank_20GCA_5F000688135.1_202014-03- 25] 1,736 sequences; 313,092,710 total letters Query= NC_010240.1 Length=169794 Score E Sequences producing significant alignments: (Bits) Value seq204 91.5 2e-13 seq1404 89.7 6e-13 seq1675 82.4 8e-11 seq1595 82.4 8e-11 seq117 82.4 8e-11 >seq204 Length=107262 Score = 91.5 bits (100), Expect = 2e-13 Identities = 106/143 (74%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 42066 TTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTT 42125 ||||| ||||| || |||||||||||||| | || | | ||||||||| ||| ||| Sbjct 83917 TTACCTGCGAAGATTAGTCGCTGCTGGTCTGGAGGGATTCCTTCCTTGTCCTGGATCTTT 83976 Query 42126 TGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTT 42185 || | | | | ||||| | ||||| |||| ||||||||||||||| || Sbjct 83977 GCCTTTACATTTTCAATGGTGTCAGAAGCCTCCACTTCGAGCGTGATGGTTTTGCCGGTG 84036 Query 42186 AGCGTCTTTACAAAGATTTGCAT 42208 |||||||| |||||||||||||| Sbjct 84037 AGCGTCTTGACAAAGATTTGCAT 84059 Score = 89.7 bits (98), Expect = 6e-13 Identities = 105/142 (74%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 42067 TACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTT 42126 ||||||| || || | ||||||||| || | ||| | | |||||||| |||||| Sbjct 83549 TACCAGCAAAAATCAATCGCTGCTGATCAGGTGGAATTCCTTCCTTGTCTTGGATTTTAG 83608 Query 42127 GTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTA 42186 |||| | | | ||||| || ||||| |||| ||||||||||||||| || | Sbjct 83609 CCTTGACATTTTCGATAGTGTCAGACGCCTCCACTTCGAGCGTGATGGTTTTGCCGGTGA 83668 Query 42187 GCGTCTTTACAAAGATTTGCAT 42208 ||||||| |||||||||||||| Sbjct 83669 GCGTCTTGACAAAGATTTGCAT 83690 >seq1404 Length=882024 Score = 89.7 bits (98), Expect = 6e-13 Identities = 70/84 (83%), Gaps = 0/84 (0%) Strand=Plus/Minus Query 56995 ATGAAAAATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACA 57054 ||| |||| |||||| |||| | ||| |||||| |||||| | ||||||||||| | Sbjct 804854 ATGCAAAAACTTCTCCCCGGCCGGGAATTGAACCCGGGTCTCGCACGTGACAGGCGCGGA 804795 Query 57055 TACTCACCACTATACTACCGAGGA 57078 |||||||||||||||||||||||| Sbjct 804794 TACTCACCACTATACTACCGAGGA 804771 >seq1675 Length=229212 Score = 82.4 bits (90), Expect = 8e-11 Identities = 69/85 (81%), Gaps = 0/85 (0%) Strand=Plus/Minus Query 56995 ATGAAAAATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACA 57054 ||| |||| |||||| |||| | ||| |||||| |||||| | ||||||| || | Sbjct 74993 ATGCAAAAGATTCTCCCCGGCCGGGAATTGAACCCGGGTCTCGCATGTGACAGACGCGGA 74934 Query 57055 TACTCACCACTATACTACCGAGGAT 57079 ||||||||||||||||||||||||| Sbjct 74933 TACTCACCACTATACTACCGAGGAT 74909 >seq1595 Length=313547 Score = 82.4 bits (90), Expect = 8e-11 Identities = 69/85 (81%), Gaps = 0/85 (0%) Strand=Plus/Minus Query 56995 ATGAAAAATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACA 57054 ||| |||| |||||| |||| | ||| |||||| |||||| | ||||||| || | Sbjct 151594 ATGCAAAACATTCTCCCCGGCCGGGAATTGAACCCGGGTCTCGCATGTGACAGACGCGGA 151535 Query 57055 TACTCACCACTATACTACCGAGGAT 57079 ||||||||||||||||||||||||| Sbjct 151534 TACTCACCACTATACTACCGAGGAT 151510 >seq117 Length=131150 Score = 82.4 bits (90), Expect = 8e-11 Identities = 105/145 (72%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 42065 CTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTT 42124 || ||| || || || || ||||||||||| | ||| | | ||| |||||| |||||| Sbjct 12175 CTCACCGGCAAAGATAAGGCGCTGCTGGTCCGGTGGAATCCCCTCTTTGTCCTGGATTTT 12234 Query 42125 TTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGT 42184 | ||||| || | | ||||| | ||||| || | |||||||| || || || Sbjct 12235 TGCTTTGACGTTCTCGATAGTGTCCGAAGCCTCCACTTCCAGGGTGATGGTCTTTCCTGT 12294 Query 42185 TAGCGTCTTTACAAAGATTTGCATT 42209 |||||||| || |||||||||||| Sbjct 12295 CAGCGTCTTCACGAAGATTTGCATT 12319 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 543201012282240