Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ancylostoma_20ceylanicum_20[genbank_20GCA_5F000688135.1_202014-03- 25] 1,736 sequences; 313,092,710 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq204 107 2e-18 seq117 82.4 7e-11 >seq204 Length=107262 Score = 107 bits (118), Expect = 2e-18 Identities = 149/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 126905 ACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCT 126964 |||| ||| | || ||||| || || |||||||| || || |||||| ||| || Sbjct 82274 ACCAGATGGAGAGTTGACTCCTTCTGGATATTGTAGTCCGACAGCGTGCGGCCATCCTCG 82333 Query 126965 AGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTG 127024 ||||| ||||| || ||||||| | ||||||||| ||||| || ||||||||||| Sbjct 82334 AGCTGCTTTCCGGCAAAGATCAACCTCTGCTGATCAGGAGGGATTCCCTCCTTGTCTTGA 82393 Query 127025 ATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTG 127084 || || ||| | | || | ||||| | ||||||||| | || | ||| || Sbjct 82394 ATCTTGGCCTTCACGTTCTCAATTGTGTCTGACGCCTCGACTTCTAACGTGATCGTCTTC 82453 Query 127085 CCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || || || || |||||||| |||||||| Sbjct 82454 CCAGTAAGGGTCTTTACAAAGATCTGCAT 82482 Score = 96.9 bits (106), Expect = 3e-15 Identities = 101/133 (76%), Gaps = 0/133 (0%) Strand=Plus/Plus Query 126981 AGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTT 127040 ||||||| ||||||||||| ||||| || || || ||||| |||||| ||||| | Sbjct 85980 AGATCAAGCGCTGCTGATCTGGAGGAATTCCTTCTTTGTCTTGGATTTTAGCCTTGACAT 86039 Query 127041 GTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTA 127100 || | |||||||| ||||||||||| ||| | |||||| || || || ||||| | Sbjct 86040 TCTCAATGGTGTCCGATGCCTCGACTTCGAGGGTAATCGTTTTTCCAGTAAGCGTTTTAA 86099 Query 127101 CAAAAATCTGCAT 127113 | ||||| ||||| Sbjct 86100 CGAAAATTTGCAT 86112 Score = 93.3 bits (102), Expect = 4e-14 Identities = 105/141 (74%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 126974 CCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGC 127033 ||||| | ||||||||||||||||| || || || || |||||||| |||||| | Sbjct 83551 CCAGCAAAAATCAATCGCTGCTGATCAGGTGGAATTCCTTCCTTGTCTTGGATTTTAGCC 83610 Query 127034 TTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGA 127093 |||| | ||||| ||||| | ||| ||||||| || | ||||||||||| || Sbjct 83611 TTGACATTTTCGATAGTGTCAGACGCCTCCACTTCGAGCGTGATGGTTTTGCCGGTGAGC 83670 Query 127094 GTTTTTACAAAAATCTGCATG 127114 || || ||||| || |||||| Sbjct 83671 GTCTTGACAAAGATTTGCATG 83691 Score = 89.7 bits (98), Expect = 5e-13 Identities = 106/144 (74%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 126971 TTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTC 127030 || || ||| |||| | ||||||||| || ||||| || || ||||||||| ||| || Sbjct 83917 TTACCTGCGAAGATTAGTCGCTGCTGGTCTGGAGGGATTCCTTCCTTGTCCTGGATCTTT 83976 Query 127031 TGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTC 127090 ||| | | ||| | |||||| | | ||| ||||||| || | ||||||||||| Sbjct 83977 GCCTTTACATTTTCAATGGTGTCAGAAGCCTCCACTTCGAGCGTGATGGTTTTGCCGGTG 84036 Query 127091 AGAGTTTTTACAAAAATCTGCATG 127114 || || || ||||| || |||||| Sbjct 84037 AGCGTCTTGACAAAGATTTGCATG 84060 >seq117 Length=131150 Score = 82.4 bits (90), Expect = 7e-11 Identities = 106/144 (74%), Gaps = 2/144 (1%) Strand=Plus/Plus Query 126971 TTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTC 127030 || |||||| |||| | ||||||||||| || || || || ||||||||| ||| || Sbjct 11497 TTACCAGCGAAGATAAGACGCTGCTGATCTGGTGGGATCCCTTCCTTGTCCTGGATCTT- 11555 Query 127031 TGC-TTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGT 127089 ||| |||| | |||| ||||||| | ||| ||||| | ||| | || || || || Sbjct 11556 TGCTTTGACGTTCTCGATAGTGTCCGAAGCCTCCACTTCCAGGGTAATGGTCTTTCCAGT 11615 Query 127090 CAGAGTTTTTACAAAAATCTGCAT 127113 ||| || || || || |||||||| Sbjct 11616 CAGGGTCTTGACGAAGATCTGCAT 11639 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475490481632640