Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ancylostoma_20ceylanicum_20[genbank_20GCA_5F000688135.1_202014-03- 25] 1,736 sequences; 313,092,710 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq204 105 6e-18 >seq204 Length=107262 Score = 105 bits (116), Expect = 6e-18 Identities = 109/143 (76%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 45198 TTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTT 45257 || ||||| | ||||| || ||||| || || ||||| |||||||| ||||| ||||| Sbjct 85970 TTACCTGCAAAGATCAAGCGCTGCTGATCTGGAGGAATTCCTTCTTTGTCTTGGATTTTA 86029 Query 45258 TGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTT 45317 |||| || | |||||| || | |||||||||||| |||| |||||| || || Sbjct 86030 GCCTTGACATTCTCAATGGTGTCCGATGCCTCGACTTCGAGGGTAATCGTTTTTCCAGTA 86089 Query 45318 AGAGTTTTTACAAAAATTTGCAT 45340 || ||||| || ||||||||||| Sbjct 86090 AGCGTTTTAACGAAAATTTGCAT 86112 Score = 104 bits (114), Expect = 2e-17 Identities = 107/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 45201 CCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTTTGT 45260 |||||| | || | ||||||||| || || ||||| || ||||||||||||||||| Sbjct 83250 CCTGCGAAGATTAGTCGTTGCTGATCAGGTGGAATACCCTCTTTATCTTGAATTTTGGCC 83309 Query 45261 TTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTTAGA 45320 |||| || | ||||||||| | |||||| ||||| || | ||| || || || || Sbjct 83310 TTGACATTCTCAATGGTGTCGGAGGCCTCGACCTCGAGTGTGATCGTCTTTCCAGTGAGG 83369 Query 45321 GTTTTTACAAAAATTTGCAT 45340 || || |||||||||||||| Sbjct 83370 GTCTTGACAAAAATTTGCAT 83389 Score = 93.3 bits (102), Expect = 4e-14 Identities = 99/131 (76%), Gaps = 0/131 (0%) Strand=Plus/Plus Query 45210 ATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT 45269 |||||||| ||||| || || ||||| ||||| || ||||| ||||| |||| | Sbjct 83560 ATCAATCGCTGCTGATCAGGTGGAATTCCTTCCTTGTCTTGGATTTTAGCCTTGACATTT 83619 Query 45270 TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACA 45329 || | ||||| || | ||| |||||||| || | ||||||||||| || || || ||| Sbjct 83620 TCGATAGTGTCAGACGCCTCCACTTCGAGCGTGATGGTTTTGCCGGTGAGCGTCTTGACA 83679 Query 45330 AAAATTTGCAT 45340 || |||||||| Sbjct 83680 AAGATTTGCAT 83690 Score = 91.5 bits (100), Expect = 1e-13 Identities = 106/143 (74%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 45198 TTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTT 45257 || |||||| | || | ||| |||||||| || || || ||||| || || || || ||| Sbjct 83917 TTACCTGCGAAGATTAGTCGCTGCTGGTCTGGAGGGATTCCTTCCTTGTCCTGGATCTTT 83976 Query 45258 TGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTT 45317 || | ||| | |||||| |||| ||| |||||||| || | ||||||||||| Sbjct 83977 GCCTTTACATTTTCAATGGTGTCAGAAGCCTCCACTTCGAGCGTGATGGTTTTGCCGGTG 84036 Query 45318 AGAGTTTTTACAAAAATTTGCAT 45340 || || || ||||| |||||||| Sbjct 84037 AGCGTCTTGACAAAGATTTGCAT 84059 Score = 82.4 bits (90), Expect = 7e-11 Identities = 102/140 (73%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 45201 CCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTTTGT 45260 |||||| | || | |||||||||||| || || || || ||||| || ||||| || Sbjct 85639 CCTGCGAAAATGAGTCGTTGCTGGTCAGGAGGGATACCCTCTTTGTCCTGAATCTTGGCC 85698 Query 45261 TTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTTAGA 45320 |||| || | ||||||||| | |||||| ||||| || | ||| || || || || Sbjct 85699 TTGACATTCTCAATGGTGTCGGAGGCCTCGACCTCGAGTGTGATCGTCTTTCCAGTGAGG 85758 Query 45321 GTTTTTACAAAAATTTGCAT 45340 || || ||||| || ||||| Sbjct 85759 GTCTTGACAAAGATCTGCAT 85778 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 451993391530560