Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ancylostoma_20ceylanicum_20[genbank_20GCA_5F000688135.1_202014-03- 25] 1,736 sequences; 313,092,710 total letters Query= NC_014637.1 Length=617453 Score E Sequences producing significant alignments: (Bits) Value seq204 98.7 4e-15 seq1340 96.9 1e-14 seq1386 86.0 2e-11 seq117 86.0 2e-11 >seq204 Length=107262 Score = 98.7 bits (108), Expect = 4e-15 Identities = 108/144 (75%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 391049 AATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATC 391108 |||| | |||||||||||||| || ||||| ||||| ||||| || || || || |||| Sbjct 86113 AATGCAAATTTTCGTTAAAACGCTTACTGGAAAAACGATTACCCTCGAAGTCGAGGCATC 86054 Query 391109 TGATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCA 391168 || | |||||| | | || ||||| ||||| || |||||||||||||| ||||| Sbjct 86053 GGACACCATTGAGAATGTCAAGGCTAAAATCCAAGACAAAGAAGGAATTCCTCCAGATCA 85994 Query 391169 ACAACGTTTAATTTTCTCAGGGAA 391192 || || || || || |||| || Sbjct 85993 GCAGCGCTTGATCTTTGCAGGTAA 85970 >seq1340 Length=4405878 Score = 96.9 bits (106), Expect = 1e-14 Identities = 186/274 (68%), Gaps = 8/274 (3%) Strand=Plus/Plus Query 451331 ACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGATGCAGGACATATT 451390 || || || || || ||||| ||||| || || ||||| || || ||||| ||| ||| Sbjct 3103987 ACAGTGCCTGCCTACTTCAACGATGCCCAGCGTCAAGCCACCAAGGATGCCGGAACCATT 3104046 Query 451391 GCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGCTCTAGCATATGGA 451450 ||||| || |||||| | ||||| || || || ||||||||||| || | || || || Sbjct 3104047 GCTGGATTGAATGTTGTCCGAATCATCAACGAGCCTACAGCAGCCGCCATCGCCTACGGT 3104106 Query 451451 CTAGGAAAATCAAAAGAAACA-GAAGaaaaaaaTATTTTAGTATTTGATTTTGGTGGAGG 451509 || | | ||||| | | ||| || || | || || ||| |||| || || Sbjct 3104107 CT-------TGACAAGAAGGAGGGAGAGCGCAACATCCTTGTTTTCGATCTTGGAGGTGG 3104159 Query 451510 AACTCATGATACTTCTGTACTTTCAATTGAAGATGGGGTATTTGAAGTAAAGGCAACCAA 451569 ||| ||| ||| | || | ||||| | || || || ||||| ||| ||||| Sbjct 3104160 TACTTTCGATGTCTCTATGCTCACCATTGACAACGGAGTGTTCGAAGTGTTGGCTACCAA 3104219 Query 451570 TGGTGATACTCATCTAGGAGGTGAAGATATTGAT 451603 || || ||||| | ||||| |||||| | ||| Sbjct 3104220 CGGAGACACTCACTTGGGAGGAGAAGATTTCGAT 3104253 >seq1386 Length=1167445 Score = 86.0 bits (94), Expect = 2e-11 Identities = 186/278 (67%), Gaps = 3/278 (1%) Strand=Plus/Minus Query 451319 GATGCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGAT 451378 || || || || || || || || || ||||| || |||| || || || || |||||| Sbjct 149734 GACGCTGTCATCACAGTACCTGCATACTTCAACGACTCACAGCGTCAGGCCACCAAAGAT 149675 Query 451379 GCAGGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGCT 451438 |||||| || | || | ||||| ||||||||||| || || || || || |||||| Sbjct 149674 GCAGGAGCAATCTCAGGAATGAATGTACTTCGAATTATCAACGAGCCCACTGCTGCTGCT 149615 Query 451439 CTAGCATATGGACTAGGAAAATCAAAAGAAACAGAAGaaaaaaaTATTTTAGTATTTGAT 451498 | || || || || | || || | || | ||| ||| | | | || ||| Sbjct 149614 ATCGCCTACGGTCTCGACAA---GAAGGGTACCGGAGAGCGAAACGTGCTCATCTTCGAT 149558 Query 451499 TTTGGTGGAGGAACTCATGATACTTCTGTACTTTCAATTGAAGATGGGGTATTTGAAGTA 451558 |||| || || || |||| || | || | || || ||||| | || |||||| Sbjct 149557 CTTGGAGGTGGTACCTTTGATGTGTCCATCCTGACCATCGAGGATGGAATCTTCGAAGTA 149498 Query 451559 AAGGCAACCAATGGTGATACTCATCTAGGAGGTGAAGA 451596 || | || |||||||||||| || ||||| ||||| Sbjct 149497 AAATCCACTGCTGGTGATACTCACCTTGGAGGAGAAGA 149460 >seq117 Length=131150 Score = 86.0 bits (94), Expect = 2e-11 Identities = 94/125 (75%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | || ||||| |||||||| ||||| ||||| || || ||||| || ||| | || Sbjct 14130 ATGCAGATCTTCGTGAAAACACTTACTGGAAAAACGATCACCCTTGAGGTGGAAGCCTCG 14071 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 |||| |||||| | | || ||||||||||| || || ||||| || || ||||| Sbjct 14070 GATACAATTGAAAATGTAAAGGCGAAAATTCAAGACAAAGAGGGAATCCCACCCGATCAG 14011 Query 391170 CAACG 391174 ||||| Sbjct 14010 CAACG 14006 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1975674455083488