Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ancylostoma_20ceylanicum_20[genbank_20GCA_5F000688135.1_202014-03- 25] 1,736 sequences; 313,092,710 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq1386 105 5e-17 seq204 100 2e-15 seq117 95.1 1e-13 >seq1386 Length=1167445 Score = 105 bits (116), Expect = 5e-17 Identities = 327/497 (66%), Gaps = 18/497 (4%) Strand=Plus/Minus Query 551895 GCTCTTCGTCGTCTAAGAACTGCTTGCGAAAGAGCCAAACGAGCTCTTTCATCTGGTACT 551954 ||||| |||||||| | || ||||||||| | ||||| || | || || || || Sbjct 149380 GCTCTGCGTCGTCTCCGCACAGCTTGCGAACGTGCCAAGCGTACCCTCTCTTCCTCATCT 149321 Query 551955 CAAACCACTATTGAAGTAGATTCATTATTTGAGGGAATTGATTATAATACGCCTATTTCG 552014 || | |||| ||| | || ||| | || ||||| || || | | || || | Sbjct 149320 CAGGCTTCTATCGAAATCGACTCACTCTTCGAGGGTATCGACTTCTACACTAACATCACT 149261 Query 552015 AGGGCCAAATTTGAAGATATTTGTTCTGATCTCTTTAGAAAAACAATTGAACCAGTAGAA 552074 | ||| ||||| || |||| | ||||| || | || || || || || || Sbjct 149260 CGAGCCCGCTTTGAGGAACTTTGCGCCGATCTGTTCCGTTCCACGATGGACCCCGTCGAG 149201 Query 552075 CAAGTTTTAAGAGATTCAAAGATTGATAA-ATCCAAAGTACATGAAATTGTGCTTGTTGG 552133 || | |||||| | ||||| || || | ||| | | ||||| || || || || || Sbjct 149200 AAATCCCTGAGAGATGCTAAGATGGACAAGAGCCAGA-TCCATGACATCGTCCTGGTCGG 149142 Query 552134 TGGATCTACAAGAATTCCTAAAATTCGCGAAATGTTAAGTTCTTAT---TTCAATGGTAA 552190 || || || | || || ||| ||| | || | |||| || ||| ||| || Sbjct 149141 AGGTTCCACCCGTATCCCGAAAGTTCAGAAGCTGCT---TTCTGATCTCTTCTCTGGAAA 149085 Query 552191 AAAATTAAATGAAAGTG--TTAATCCAGATGAGGCTGTTGCCTATGGTGCCGCAATTCAA 552248 || | || |||| | || || |||||||| ||||||||||||||||| | ||| Sbjct 149084 GGAACTGAAC--AAGTCGATCAACCCTGATGAGGCCGTTGCCTATGGTGCCGCTGTCCAA 149027 Query 552249 GCAGCTATTCTTTCTG--GACAA-ACTGATGAAAAACTACAAAATATTGTACTTGTAGAT 552305 || ||||| ||||| | ||||| |||| | | | ||| || || | ||| | ||| Sbjct 149026 GCTGCTATCCTTTCCGGTGACAAGTCTGAGG---CAGTGCAAGATCTTCTGCTTCTTGAT 148970 Query 552306 GTTACTCCTCTATCTCTTGGTTTAGAAACAGTTGGAGGTATTATGACTAATCTTATCGAT 552365 || | ||||| || |||||| | || |||| ||||||| | |||||| ||| ||| | Sbjct 148969 GTGGCACCTCTCTCACTTGGTATTGAGACAGCTGGAGGTGTGATGACTGCTCTGATCAAG 148910 Query 552366 AGAAATACTACTATTCC 552382 || || || || || || Sbjct 148909 AGGAACACCACCATCCC 148893 Score = 98.7 bits (108), Expect = 8e-15 Identities = 134/187 (72%), Gaps = 0/187 (0%) Strand=Plus/Minus Query 550396 GGATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGA 550455 ||| || || || || ||||| ||||| || || |||||||| ||||| || || ||||| Sbjct 149735 GGACGCTGTCATCACAGTACCTGCATACTTCAACGACTCACAGCGTCAGGCCACCAAAGA 149676 Query 550456 TGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGC 550515 ||| ||| || | ||| | ||||| ||||| |||||||| || || ||||||||||| Sbjct 149675 TGCAGGAGCAATCTCAGGAATGAATGTACTTCGAATTATCAACGAGCCCACTGCTGCTGC 149616 Query 550516 ACTTGCATATGGACTTGATAAACATAATGATCAAGAACTTAATGTACTCATCTTTGATTG 550575 | || || || || || || | | ||| | || || |||||||| ||| Sbjct 149615 TATCGCCTACGGTCTCGACAAGAAGGGTACCGGAGAGCGAAACGTGCTCATCTTCGATCT 149556 Query 550576 TGGAGGT 550582 ||||||| Sbjct 149555 TGGAGGT 149549 >seq204 Length=107262 Score = 100 bits (110), Expect = 2e-15 Identities = 110/144 (76%), Gaps = 2/144 (1%) Strand=Plus/Plus Query 563332 TTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTTATCTTGAATTTTT 563391 || || ||||| || | | |||||||| ||||||||||||||||| ||||| ||||| Sbjct 85970 TTACCTGCAAAGATCAAGCGCTGCTGATCTGGAGGAATTCCTTCTTTGTCTTGGATTTTA 86029 Query 563392 TGTTTTACTGCCTCAATTGTATCAGTGTGAGTACA-TTCGAGAGTAACAGTTTTACCAGT 563450 || || |||||| || || | || | | |||||| |||| ||||| ||||| Sbjct 86030 GCCTTGACATTCTCAATGGTGTCCGA-TGCCTCGACTTCGAGGGTAATCGTTTTTCCAGT 86088 Query 563451 AAGAGTTTTAACGAAAATTTGCAT 563474 ||| |||||||||||||||||||| Sbjct 86089 AAGCGTTTTAACGAAAATTTGCAT 86112 >seq117 Length=131150 Score = 95.1 bits (104), Expect = 1e-13 Identities = 107/141 (76%), Gaps = 2/141 (1%) Strand=Plus/Plus Query 563335 CCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTTATCTTGAATTTTTTGT 563394 || ||||| ||||||| ||||||||| || || ||||| ||||| ||||||||||| Sbjct 13991 CCAGCAAAGATAAGTCGTTGCTGATCGGGTGGGATTCCCTCTTTGTCTTGAATTTTCGCC 14050 Query 563395 TTTACTGCCTCAATTGTATCAGTGTGAGTACA-TTCGAGAGTAACAGTTTTACCAGTAAG 563453 ||||| ||||||||||| | | | | || || || || | ||||| |||||||| Sbjct 14051 TTTACATTTTCAATTGTATCCGAG-GCTTCCACCTCAAGGGTGATCGTTTTTCCAGTAAG 14109 Query 563454 AGTTTTAACGAAAATTTGCAT 563474 ||||| ||||| || ||||| Sbjct 14110 TGTTTTCACGAAGATCTGCAT 14130 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4029204192490640