Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ancylostoma_20ceylanicum_20[genbank_20GCA_5F000688135.1_202014-03- 25] 1,736 sequences; 313,092,710 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq1340 98.7 6e-15 seq1386 96.9 2e-14 seq204 93.3 3e-13 seq1451 87.8 1e-11 >seq1340 Length=4405878 Score = 98.7 bits (108), Expect = 6e-15 Identities = 162/231 (70%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 474647 AAACAATTTTCACCGGAACAAATTTCTTCAATGGTTTTAGCCAAAATGAAACAAACCGC- 474705 || || ||| | || ||| | || || | |||||| | | || ||||| | | ||| Sbjct 3103888 AAGCAGTTTACTCCCGAAGAGATCTCCGCCATGGTTCTCGGAAAGATGAAGGAGATCGCC 3103947 Query 474706 GAGCTCATATCTTGGACAAGAAGTAACTGATGCAGTAATTACTGTTCCAGCATATTTTAA 474765 ||| || || |||||| | ||||| | | || || | || || || || || || || Sbjct 3103948 GAG-TCTTACCTTGGAAAGGAAGTGAAACACGCTGTTGTCACAGTGCCTGCCTACTTCAA 3104006 Query 474766 TGATTCTCAACGTCAAGCAACTAAAGATGCGGGAAGAATTGCAGGTCTTAATGTTTTACG 474825 ||| | || |||||||| || || ||||| |||| ||||| || | |||||| | || Sbjct 3104007 CGATGCCCAGCGTCAAGCCACCAAGGATGCCGGAACCATTGCTGGATTGAATGTTGTCCG 3104066 Query 474826 TATTATTAATGAACCAACAGCAGCCGCACTTGCTTATGGTCTTGATAAGAA 474876 || || || || || ||||||||||| | || || |||||||| ||||| Sbjct 3104067 AATCATCAACGAGCCTACAGCAGCCGCCATCGCCTACGGTCTTGACAAGAA 3104117 >seq1386 Length=1167445 Score = 96.9 bits (106), Expect = 2e-14 Identities = 320/486 (66%), Gaps = 14/486 (3%) Strand=Plus/Minus Query 475487 CGTCTTAGAACTGCTTGTGAACGTGCTAAGCGAGCTCTTTCTTCTGCTACTCAAACTACT 475546 ||||| | || ||||| |||||||| ||||| | || ||||| | |||| || || Sbjct 149371 CGTCTCCGCACAGCTTGCGAACGTGCCAAGCGTACCCTCTCTTCCTCATCTCAGGCTTCT 149312 Query 475547 GTTGAAGTTGATTCTCTTTTTGAAGGAATTGATTATAATACTCTTATTACAAGGGCTAAA 475606 | ||| | || || || || || || || || | | ||| || || | || Sbjct 149311 ATCGAAATCGACTCACTCTTCGAGGGTATCGACTTCTACACTAACATCACTCGAGCCCGC 149252 Query 475607 TTTGAAGATATTTGTTCTGATCTCTTTAGAAAAACAATTGAACCCGTTGAACAAGTTCTC 475666 ||||| || |||| | ||||| || | || || || ||||| || || || Sbjct 149251 TTTGAGGAACTTTGCGCCGATCTGTTCCGTTCCACGATGGACCCCGTCGAGAAATCCCTG 149192 Query 475667 AGAGATTCTAAACTTGACAAATCACAAGTCCATGAAATTGTTCTTGTAGGAGGTTCAACA 475726 |||||| |||| | ||||| || ||||||| || || || || |||||||| || Sbjct 149191 AGAGATGCTAAGATGGACAAGAGCCAGATCCATGACATCGTCCTGGTCGGAGGTTCCACC 149132 Query 475727 AGAATTCCAAAAATAAGAGAAA-TGCTTTCATCATATTTTAA-TGGTAAAAAGTTAAATG 475784 | || || ||| | |||| ||||||| | || | || ||| |||| || || Sbjct 149131 CGTATCCCGAAAGTTC-AGAAGCTGCTTTC-TGATCTCTTCTCTGG---AAAGG-AACTG 149078 Query 475785 AA--AGTGTA--AATCCTGATGAAGCTGTTGCATATGGAGCTGCTGTCCAAGCAGCTATT 475840 || ||| | || |||||||| || ||||| ||||| || ||||||||||| ||||| Sbjct 149077 AACAAGTCGATCAACCCTGATGAGGCCGTTGCCTATGGTGCCGCTGTCCAAGCTGCTATC 149018 Query 475841 TTATCAGGTCAATCAGAC-GAGAAACTAAATAATATTGTACTTGTTGACGTAACTCCACT 475899 | || ||| | || | ||| | | | || || | ||| |||| || | || || Sbjct 149017 CTTTCCGGT-GACAAGTCTGAGGCAGTGCAAGATCTTCTGCTTCTTGATGTGGCACCTCT 148959 Query 475900 TTCATTAGGTCTTGAAACAGTTGGAGGGATTATGACTAATCTTATTGACAGAAATACTCC 475959 ||| | ||| |||| |||| |||||| | |||||| ||| || | || || || | Sbjct 148958 CTCACTTGGTATTGAGACAGCTGGAGGTGTGATGACTGCTCTGATCAAGAGGAACACCAC 148899 Query 475960 TATCCC 475965 ||||| Sbjct 148898 CATCCC 148893 >seq204 Length=107262 Score = 93.3 bits (102), Expect = 3e-13 Identities = 105/138 (76%), Gaps = 2/138 (1%) Strand=Plus/Plus Query 480633 CCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTTGTCTTGAATCTTTTGT 480692 ||||||||||| | || || |||||||| |||||||||||||||||||| || || Sbjct 83551 CCAGCAAAAATCAATCGCTGCTGATCAGGTGGAATTCCTTCCTTGTCTTGGATTTTAGCC 83610 Query 480693 TTGACAGCTTCAATAGTATCAG-TGTGTGAAGTTTCAAGGGTAATAGTTTTACCGGTGAG 480751 |||||| ||| ||||| |||| | | | ||| || || || ||||| |||||||| Sbjct 83611 TTGACATTTTCGATAGTGTCAGACGCCTCCA-CTTCGAGCGTGATGGTTTTGCCGGTGAG 83669 Query 480752 AGTCTTAACGAAAATTTG 480769 ||||| || || ||||| Sbjct 83670 CGTCTTGACAAAGATTTG 83687 Score = 87.8 bits (96), Expect = 1e-11 Identities = 106/142 (75%), Gaps = 2/142 (1%) Strand=Plus/Plus Query 480629 CTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTTGTCTTGAATCTT 480688 ||| || ||||| || | || || ||||| |||||||||||||| |||||||| || || Sbjct 85969 CTTACCTGCAAAGATCAAGCGCTGCTGATCTGGAGGAATTCCTTCTTTGTCTTGGATTTT 86028 Query 480689 TTGTTTGACAGCTTCAATAGTATCAG-TGTGTGAAGTTTCAAGGGTAATAGTTTTACCGG 480747 |||||| ||||| || || | || | | ||| |||||||| ||||| || | Sbjct 86029 AGCCTTGACATTCTCAATGGTGTCCGATGCCTCGA-CTTCGAGGGTAATCGTTTTTCCAG 86087 Query 480748 TGAGAGTCTTAACGAAAATTTG 480769 | || || |||||||||||||| Sbjct 86088 TAAGCGTTTTAACGAAAATTTG 86109 >seq1451 Length=625899 Score = 87.8 bits (96), Expect = 1e-11 Identities = 163/237 (69%), Gaps = 2/237 (1%) Strand=Plus/Plus Query 474641 GAAACTAAACAATTTTCACCGGAACAAATTTCTTCAATGGTTTTAGCCAAAATGAAACAA 474700 || || || || ||| | || || |||| || | |||||| | | || ||||| | Sbjct 403811 GAGACGAAGCAGTTTGCTCCTGAGGAAATCTCCGCCATGGTTCTGACAAAGATGAAGGAG 403870 Query 474701 ACCGC-GAGCTCATATCTTGGACAAGAAGTAACTGATGCAGTAATTACTGTTCCAGCATA 474759 | ||| ||| || || ||||| |||| || | | ||||| | || ||||| || || Sbjct 403871 ATCGCCGAG-TCTTACCTTGGCAAAGAGGTGAAGCACGCAGTCGTCACCGTTCCGGCCTA 403929 Query 474760 TTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCGGGAAGAATTGCAGGTCTTAATGT 474819 || || || | ||||||||||| || || ||||| || | || || || | || || Sbjct 403930 CTTCAACGACGCACAACGTCAAGCGACCAAGGATGCTGGTACGATCGCTGGATTGAACGT 403989 Query 474820 TTTACGTATTATTAATGAACCAACAGCAGCCGCACTTGCTTATGGTCTTGATAAGAA 474876 | || || || || || ||||| |||||||| | |||||||| || || ||||| Sbjct 403990 CGTCCGGATCATCAACGAGCCAACTGCAGCCGCTATCGCTTATGGCCTCGACAAGAA 404046 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3268104734536928