Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ancylostoma_20ceylanicum_20[genbank_20GCA_5F000688135.1_202014-03- 25] 1,736 sequences; 313,092,710 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq204 114 1e-20 seq117 104 2e-17 seq1338 82.4 7e-11 >seq204 Length=107262 Score = 114 bits (126), Expect = 1e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||||||| | || || || || || || || || ||| | ||||| || || | Sbjct 82482 ATGCAGATCTTTGTAAAGACCCTTACTGGGAAGACGATCACGTTAGAAGTCGAGGCGTCA 82423 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 |||||| | || | || || ||||| |||||||| || ||||| ||||| ||||| Sbjct 82422 GACACAATTGAGAACGTGAAGGCCAAGATTCAAGACAAGGAGGGAATCCCTCCTGATCAG 82363 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || | |||||||||||||| || ||||| |||||| | | |||| || || || Sbjct 82362 CAGAGGTTGATCTTTGCCGGAAAGCAGCTCGAGGATGGCCGCACGCTGTCGGACTACAAT 82303 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGC 24931 || || ||||| || || || || |||| | || | || |||||| Sbjct 82302 ATCCAGAAGGAGTCAACTCTCCATCTGGTTCTTCGTCTCCGTGGAGGC 82255 Score = 111 bits (122), Expect = 1e-19 Identities = 112/146 (77%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 24701 ACGATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCC 24760 || ||||| || || |||||||||| || || ||||| ||||| |||||||| || || Sbjct 86115 ACAATGCAAATTTTCGTTAAAACGCTTACTGGAAAAACGATTACCCTCGAAGTCGAGGCA 86056 Query 24761 ACCGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGAT 24820 | ||||| | || | || || || |||||||||||||||||||| ||||| ||| Sbjct 86055 TCGGACACCATTGAGAATGTCAAGGCTAAAATCCAAGACAAAGAAGGAATTCCTCCAGAT 85996 Query 24821 CAACAACGTTTGATCTTTGCCGGGAA 24846 || || || ||||||||||| || || Sbjct 85995 CAGCAGCGCTTGATCTTTGCAGGTAA 85970 Score = 105 bits (116), Expect = 6e-18 Identities = 109/143 (76%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| |||||| | || ||||| ||||| ||||| || ||||||||||| || || | Sbjct 84059 ATGCAAATCTTTGTCAAGACGCTCACCGGCAAAACCATCACGCTCGAAGTGGAGGCTTCT 84000 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | |||| ||||| ||||||||| ||||| |||||||| ||||| || || Sbjct 83999 GACACCATTGAAAATGTAAAGGCAAAGATCCAGGACAAGGAAGGAATCCCTCCAGACCAG 83940 Query 24824 CAACGTTTGATCTTTGCCGGGAA 24846 || || | ||||| || || || Sbjct 83939 CAGCGACTAATCTTCGCAGGTAA 83917 Score = 104 bits (114), Expect = 2e-17 Identities = 107/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| |||||| | || ||||| ||||| ||||| || ||||||||||| || || | Sbjct 83690 ATGCAAATCTTTGTCAAGACGCTCACCGGCAAAACCATCACGCTCGAAGTGGAGGCGTCT 83631 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | |||| || || || ||||||||||| |||||||| || || ||||| Sbjct 83630 GACACTATCGAAAATGTCAAGGCTAAAATCCAAGACAAGGAAGGAATTCCACCTGATCAG 83571 Query 24824 CAACGTTTGATCTTTGCCGG 24843 || || ||||| ||||| || Sbjct 83570 CAGCGATTGATTTTTGCTGG 83551 Score = 95.1 bits (104), Expect = 1e-14 Identities = 105/140 (75%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||||||| | || || || ||||| || || || ||||| || || || || | Sbjct 82787 ATGCAGATCTTTGTGAAGACCCTCACCGGGAAGACGATCACGCTTGAGGTGGAGGCTTCT 82728 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | |||| ||||| ||||||||| |||||||||||||| ||||| || || Sbjct 82727 GACACCATTGAAAATGTAAAGGCAAAGATCCAGGACAAAGAAGGAATCCCTCCAGACCAG 82668 Query 24824 CAACGTTTGATCTTTGCCGG 24843 || || | ||||| || || Sbjct 82667 CAGCGACTAATCTTCGCAGG 82648 >seq117 Length=131150 Score = 104 bits (114), Expect = 2e-17 Identities = 107/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| || || | || || | ||||| || ||||| ||||||||||| || || | Sbjct 13045 ATGCAAATTTTCGTGAAGACATTGACCGGAAAGACTATCACGCTCGAAGTGGAGGCTTCA 12986 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 |||||| | |||| || ||| |||||||||||||||||| ||||| || || ||||| Sbjct 12985 GACACAATCGAAAATGTGAAAGCAAAGATCCAAGACAAAGAGGGAATTCCACCAGATCAG 12926 Query 24824 CAACGTTTGATCTTTGCCGG 24843 || || | ||||||||||| Sbjct 12925 CAGCGACTTATCTTTGCCGG 12906 Score = 100 bits (110), Expect = 3e-16 Identities = 106/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | ||||| || || || ||||| || || || || || |||||| | Sbjct 14130 ATGCAGATCTTCGTGAAAACACTTACTGGAAAAACGATCACCCTTGAGGTGGAAGCCTCG 14071 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || ||| | |||| ||||| || || ||||||||||| ||||| || |||||||| Sbjct 14070 GATACAATTGAAAATGTAAAGGCGAAAATTCAAGACAAAGAGGGAATCCCACCCGATCAG 14011 Query 24824 CAACGTTTGATCTTTGCCGG 24843 ||||| | |||||||| || Sbjct 14010 CAACGACTTATCTTTGCTGG 13991 Score = 82.4 bits (90), Expect = 7e-11 Identities = 104/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | || ||||| || || ||||| || || | || || ||||| | Sbjct 11269 ATGCAGATCTTCGTGAAGACGCTGACGGGAAAAACCATCACCTTGGAGGTCGAAGCTTCG 11210 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | ||||| |||||| |||||||| ||||| || || || ||||| Sbjct 11209 GACACTATTGAGAACGTAAAGGCAAAGATTCAAGACAAGGAAGGCATCCCACCAGATCAG 11150 Query 24824 CAACGTTTGATCTTTGCCGGGAA 24846 || | | ||||||||||| || Sbjct 11149 CAGAGGCTCATCTTTGCCGGTAA 11127 Score = 82.4 bits (90), Expect = 7e-11 Identities = 104/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | || || || || || || || ||||| || ||||| || || | Sbjct 11639 ATGCAGATCTTCGTCAAGACCCTGACTGGAAAGACCATTACCCTGGAAGTGGAGGCTTCG 11580 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || ||| ||||||||| ||||| ||||| || || || ||||| Sbjct 11579 GACACTATCGAGAACGTCAAAGCAAAGATCCAGGACAAGGAAGGGATCCCACCAGATCAG 11520 Query 24824 CAACGTTTGATCTTTGCCGGGAA 24846 || ||| | ||||| || || || Sbjct 11519 CAGCGTCTTATCTTCGCTGGTAA 11497 Score = 82.4 bits (90), Expect = 7e-11 Identities = 104/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | || ||||| || || || || || || || || || |||||| | Sbjct 13375 ATGCAGATCTTCGTCAAGACGCTGACTGGAAAGACCATCACCCTGGAGGTCGAAGCCTCG 13316 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | ||||| || ||||| ||||| ||||| || || || || || Sbjct 13315 GACACCATTGAGAACGTAAAGGCCAAAATCCAGGACAAGGAAGGGATCCCACCAGACCAG 13256 Query 24824 CAACGTTTGATCTTTGCCGGGAA 24846 ||||| | ||||||||||| || Sbjct 13255 CAACGCCTTATCTTTGCCGGTAA 13233 >seq1338 Length=4677894 Score = 82.4 bits (90), Expect = 7e-11 Identities = 102/140 (73%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| ||||| | || || || || || || || || |||||||| || |||||| | Sbjct 229621 ATGCAAATCTTCGTGAAGACTCTCACGGGGAAGACAATCACGCTCGAGGTTGAAGCCTCG 229680 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || |||||||||||||| || ||||| || || ||||| Sbjct 229681 GACACGATCGAGAATGTGAAGGCCAAGATCCAAGACAAGGAGGGAATCCCACCTGATCAG 229740 Query 24824 CAACGTTTGATCTTTGCCGG 24843 || ||| | ||||| || || Sbjct 229741 CAGCGTCTCATCTTCGCTGG 229760 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449887837222080