Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ancylostoma_20ceylanicum_20[genbank_20GCA_5F000688135.1_202014-03- 25] 1,736 sequences; 313,092,710 total letters Query= NC_022646.1 Length=101818 Score E Sequences producing significant alignments: (Bits) Value seq204 107 1e-18 seq117 89.7 3e-13 >seq204 Length=107262 Score = 107 bits (118), Expect = 1e-18 Identities = 139/192 (72%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 34786 CTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAA 34845 ||||||||| || || |||||||| || |||| |||| || || ||||||||||| || Sbjct 82291 CTCCTTCTGGATATTGTAGTCCGACAGCGTGCGGCCATCCTCGAGCTGCTTTCCGGCAAA 82350 Query 34846 GATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGA 34905 ||||| | ||||| || | || | ||||||||||| | || || || ||| Sbjct 82351 GATCAACCTCTGCTGATCAGGAGGGATTCCCTCCTTGTCTTGAATCTTGGCCTTCACGTT 82410 Query 34906 TGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTAC 34965 | || | || |||||||| || | || || ||||| || || ||||||||||| Sbjct 82411 CTCAATTGTGTCTGACGCCTCGACTTCTAACGTGATCGTCTTCCCAGTAAGGGTCTTTAC 82470 Query 34966 AAAGATCTGCAT 34977 |||||||||||| Sbjct 82471 AAAGATCTGCAT 82482 Score = 86.0 bits (94), Expect = 4e-12 Identities = 103/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 34838 CCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGT 34897 || || ||||| ||||| ||||||||| | || | |||||||||||| | || || | Sbjct 82942 CCTGCAAAGATTAGTCGCTGCTGGTCTGGAGGGATCCCCTCCTTGTCCTGAATCTTGGCT 83001 Query 34898 TTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGG 34957 || ||| | || | ||| || ||||| || | ||| || || ||||| |||||| Sbjct 83002 TTCACGTTCTCGATGGTGTCAGACGCTTCGACCTCCAGGGTGATAGTTTTTCCTGTGAGG 83061 Query 34958 GTCTTTACAAAGATCTGCAT 34977 ||||| |||||||| ||||| Sbjct 83062 GTCTTCACAAAGATTTGCAT 83081 Score = 84.2 bits (92), Expect = 1e-11 Identities = 105/142 (74%), Gaps = 4/142 (3%) Strand=Plus/Plus Query 34838 CCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGT 34897 || ||||| || |||||||||||||| | || | ||||| ||||| | || || Sbjct 85639 CCTGCGAAAATGAGTCGTTGCTGGTCAGGAGGGATACCCTCTTTGTCCTGAATCTTGGCC 85698 Query 34898 TTGACGGATGCT--ATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGA 34955 ||||| || || || | || ||||||||| || | || || |||||||| |||| Sbjct 85699 TTGAC--ATTCTCAATGGTGTCGGAGGCCTCGACCTCGAGTGTGATCGTCTTTCCAGTGA 85756 Query 34956 GGGTCTTTACAAAGATCTGCAT 34977 ||||||| |||||||||||||| Sbjct 85757 GGGTCTTGACAAAGATCTGCAT 85778 Score = 82.4 bits (90), Expect = 5e-11 Identities = 102/140 (73%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 34838 CCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGT 34897 || |||||||| ||||| ||||||||| | || | || || ||||| | || ||| Sbjct 82648 CCTGCGAAGATTAGTCGCTGCTGGTCTGGAGGGATTCCTTCTTTGTCCTGGATCTTTGCC 82707 Query 34898 TTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGG 34957 || || | | || | ||| ||||| || |||| || || ||||| || |||||| Sbjct 82708 TTTACATTTTCAATGGTGTCAGAAGCCTCCACCTCAAGCGTGATCGTCTTCCCGGTGAGG 82767 Query 34958 GTCTTTACAAAGATCTGCAT 34977 ||||| |||||||||||||| Sbjct 82768 GTCTTCACAAAGATCTGCAT 82787 >seq117 Length=131150 Score = 89.7 bits (98), Expect = 3e-13 Identities = 106/144 (74%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 34834 CTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTT 34893 ||| || |||||||| || || ||||| ||| | || | ||| |||||||| | || || Sbjct 11496 CTTACCAGCGAAGATAAGACGCTGCTGATCTGGTGGGATCCCTTCCTTGTCCTGGATCTT 11555 Query 34894 TTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGT 34953 | ||||||| | || | || ||||| || || | ||| ||||||||||| || Sbjct 11556 TGCTTTGACGTTCTCGATAGTGTCCGAAGCCTCCACTTCCAGGGTAATGGTCTTTCCAGT 11615 Query 34954 GAGGGTCTTTACAAAGATCTGCAT 34977 |||||||| || ||||||||||| Sbjct 11616 CAGGGTCTTGACGAAGATCTGCAT 11639 Score = 89.7 bits (98), Expect = 3e-13 Identities = 106/144 (74%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 34834 CTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTT 34893 ||| ||||| ||||| || |||||||||||| | || | ||| |||||||| | ||||| Sbjct 13232 CTTACCGGCAAAGATAAGGCGTTGCTGGTCTGGTGGGATCCCTTCCTTGTCCTGGATTTT 13291 Query 34894 TTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGT 34953 || ||| | || | || ||| ||||| || | ||| ||||||||||| || Sbjct 13292 GGCCTTTACGTTCTCAATGGTGTCCGAGGCTTCGACCTCCAGGGTGATGGTCTTTCCAGT 13351 Query 34954 GAGGGTCTTTACAAAGATCTGCAT 34977 || ||||| || ||||||||||| Sbjct 13352 CAGCGTCTTGACGAAGATCTGCAT 13375 Score = 87.8 bits (96), Expect = 1e-12 Identities = 113/156 (72%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 34822 ATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTT 34881 || ||| ||| ||| || |||||||| || || ||||| ||| | || | ||| ||||| Sbjct 11824 ATTGTCAAGTATCTTACCAGCGAAGATGAGACGCTGCTGATCTGGTGGGATCCCTTCCTT 11883 Query 34882 GTCGTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTAT 34941 || | || ||| ||||||| | || | || ||||| || || | ||| || Sbjct 11884 ATCCTGGATCTTTGCTTTGACGTTCTCGATGGTATCCGAAGCCTCAACTTCCAGGGTGAT 11943 Query 34942 GGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 ||||||||| || |||||||| || ||||||||||| Sbjct 11944 GGTCTTTCCAGTCAGGGTCTTAACGAAGATCTGCAT 11979 Score = 82.4 bits (90), Expect = 5e-11 Identities = 102/140 (73%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 34838 CCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGT 34897 ||||| ||||| || || |||||||| | || | |||||| ||||| | |||||| | Sbjct 12179 CCGGCAAAGATAAGGCGCTGCTGGTCCGGTGGAATCCCCTCTTTGTCCTGGATTTTTGCT 12238 Query 34898 TTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGG 34957 |||||| | || | || ||||| || || | ||| ||||||||||| || || Sbjct 12239 TTGACGTTCTCGATAGTGTCCGAAGCCTCCACTTCCAGGGTGATGGTCTTTCCTGTCAGC 12298 Query 34958 GTCTTTACAAAGATCTGCAT 34977 ||||| || ||||| ||||| Sbjct 12299 GTCTTCACGAAGATTTGCAT 12318 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 325685909154584