Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ancylostoma_20ceylanicum_20[genbank_20GCA_5F000688135.1_202014-03- 25] 1,736 sequences; 313,092,710 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq204 141 2e-28 seq117 120 6e-22 >seq204 Length=107262 Score = 141 bits (156), Expect = 2e-28 Identities = 168/228 (74%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 ||||| | | ||| ||||| | || ||||| || || ||||| ||||| || || || Sbjct 82256 CCTCCACGGAGACGAAGAACCAGATGGAGAGTTGACTCCTTCTGGATATTGTAGTCCGAC 82315 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 || | | || || || || || ||||| |||||||| | || || ||||| ||||| Sbjct 82316 AGCGTGCGGCCATCCTCGAGCTGCTTTCCGGCAAAGATCAACCTCTGCTGATCAGGAGGG 82375 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 ||||| ||||| ||||||||||| || || || || ||||| || || | || ||| Sbjct 82376 ATTCCCTCCTTGTCTTGAATCTTGGCCTTCACGTTCTCAATTGTGTCTGACGCCTCGACT 82435 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATT 82811 || || || |||||||| || || | ||||||||||| ||||||||| Sbjct 82436 TCTAACGTGATCGTCTTCCCAGTAAGGGTCTTTACAAAGATCTGCATT 82483 Score = 118 bits (130), Expect = 2e-21 Identities = 112/143 (78%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 82668 TTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTT 82727 || || || |||||||||| || || |||||||| ||||||||||| || || |||||| Sbjct 83917 TTACCTGCGAAGATTAGTCGCTGCTGGTCTGGAGGGATTCCTTCCTTGTCCTGGATCTTT 83976 Query 82728 GCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTC 82787 || |||||||||||||| || ||| || || ||||| | || || || ||||| || Sbjct 83977 GCCTTTACATTTTCAATGGTGTCAGAAGCCTCCACTTCGAGCGTGATGGTTTTGCCGGTG 84036 Query 82788 AACGTCTTTACAAATATCTGCAT 82810 | |||||| ||||| || ||||| Sbjct 84037 AGCGTCTTGACAAAGATTTGCAT 84059 Score = 114 bits (126), Expect = 3e-20 Identities = 110/141 (78%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 82671 CCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCT 82730 || || |||||||||| || || |||||||| |||||||| || || || |||||||| Sbjct 82648 CCTGCGAAGATTAGTCGCTGCTGGTCTGGAGGGATTCCTTCTTTGTCCTGGATCTTTGCC 82707 Query 82731 TTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAAC 82790 |||||||||||||| || ||| || || || || | || |||||||| || || | Sbjct 82708 TTTACATTTTCAATGGTGTCAGAAGCCTCCACCTCAAGCGTGATCGTCTTCCCGGTGAGG 82767 Query 82791 GTCTTTACAAATATCTGCATT 82811 ||||| ||||| ||||||||| Sbjct 82768 GTCTTCACAAAGATCTGCATT 82788 Score = 96.9 bits (106), Expect = 7e-15 Identities = 106/141 (75%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 82671 CCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCT 82730 || ||||||||||||| || || |||||||| || || ||||| || |||||||| ||| Sbjct 82942 CCTGCAAAGATTAGTCGCTGCTGGTCTGGAGGGATCCCCTCCTTGTCCTGAATCTTGGCT 83001 Query 82731 TTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAAC 82790 || || || || || || ||| | ||| || |||| || || || || ||||| | Sbjct 83002 TTCACGTTCTCGATGGTGTCAGACGCTTCGACCTCCAGGGTGATAGTTTTTCCTGTGAGG 83061 Query 82791 GTCTTTACAAATATCTGCATT 82811 ||||| ||||| || |||||| Sbjct 83062 GTCTTCACAAAGATTTGCATT 83082 Score = 91.5 bits (100), Expect = 3e-13 Identities = 104/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 82671 CCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCT 82730 |||||||| || | || || ||||| || || ||||||||||| ||||| || || || Sbjct 83551 CCAGCAAAAATCAATCGCTGCTGATCAGGTGGAATTCCTTCCTTGTCTTGGATTTTAGCC 83610 Query 82731 TTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAAC 82790 || |||||||| || || ||| | || ||||| | || || || ||||| || | | Sbjct 83611 TTGACATTTTCGATAGTGTCAGACGCCTCCACTTCGAGCGTGATGGTTTTGCCGGTGAGC 83670 Query 82791 GTCTTTACAAATATCTGCAT 82810 ||||| ||||| || ||||| Sbjct 83671 GTCTTGACAAAGATTTGCAT 83690 Score = 87.8 bits (96), Expect = 4e-12 Identities = 104/141 (74%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 82671 CCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCT 82730 || || |||||||||| ||| ||||| || || || || || ||||||||||| || || Sbjct 83250 CCTGCGAAGATTAGTCGTTGCTGATCAGGTGGAATACCCTCTTTATCTTGAATTTTGGCC 83309 Query 82731 TTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAAC 82790 || ||||| ||||| || || | || || || | || |||||||| || || | Sbjct 83310 TTGACATTCTCAATGGTGTCGGAGGCCTCGACCTCGAGTGTGATCGTCTTTCCAGTGAGG 83369 Query 82791 GTCTTTACAAATATCTGCATT 82811 ||||| ||||| || |||||| Sbjct 83370 GTCTTGACAAAAATTTGCATT 83390 >seq117 Length=131150 Score = 120 bits (132), Expect = 6e-22 Identities = 113/144 (78%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 82668 TTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTT 82727 || || |||||||| || || || |||||||| || || |||||||| |||||||||||| Sbjct 11127 TTACCGGCAAAGATGAGCCTCTGCTGATCTGGTGGGATGCCTTCCTTGTCTTGAATCTTT 11186 Query 82728 GCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTC 82787 || ||||| || ||||| || || || ||| || ||||| || || || || || ||| Sbjct 11187 GCCTTTACGTTCTCAATAGTGTCCGAAGCTTCGACCTCCAAGGTGATGGTTTTTCCCGTC 11246 Query 82788 AACGTCTTTACAAATATCTGCATT 82811 | |||||| || || ||||||||| Sbjct 11247 AGCGTCTTCACGAAGATCTGCATT 11270 Score = 111 bits (122), Expect = 3e-19 Identities = 109/141 (77%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 82671 CCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCT 82730 ||||| ||||| || | ||| ||||| || || || || ||||||||||| ||||| ||| Sbjct 12503 CCAGCGAAGATGAGACGTTGCTGATCGGGTGGGATGCCCTCCTTATCTTGGATCTTGGCT 12562 Query 82731 TTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAAC 82790 || || || || || ||||| || || || |||| ||| || ||||| ||||||| | Sbjct 12563 TTCACGTTCTCGATTGTATCTGAAGCCTCAACCTCCAGAGTGATGGTCTTTCCTGTCAGC 12622 Query 82791 GTCTTTACAAATATCTGCATT 82811 ||||| || || ||||||||| Sbjct 12623 GTCTTCACGAAGATCTGCATT 12643 Score = 107 bits (118), Expect = 4e-18 Identities = 110/144 (76%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 82668 TTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTT 82727 || ||||| ||||| || | || |||||||| || || ||||||||||| || |||||| Sbjct 11837 TTACCAGCGAAGATGAGACGCTGCTGATCTGGTGGGATCCCTTCCTTATCCTGGATCTTT 11896 Query 82728 GCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTC 82787 ||||| || || || || ||||| || || ||||||| || || ||||| || ||| Sbjct 11897 GCTTTGACGTTCTCGATGGTATCCGAAGCCTCAACTTCCAGGGTGATGGTCTTTCCAGTC 11956 Query 82788 AACGTCTTTACAAATATCTGCATT 82811 | ||||| || || ||||||||| Sbjct 11957 AGGGTCTTAACGAAGATCTGCATT 11980 Score = 105 bits (116), Expect = 1e-17 Identities = 108/141 (77%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 82671 CCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCT 82730 || |||||||| |||| || |||||||| || ||||| || || ||||| ||||||||| Sbjct 12906 CCGGCAAAGATAAGTCGCTGCTGATCTGGTGGAATTCCCTCTTTGTCTTGGATCTTTGCT 12965 Query 82731 TTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAAC 82790 || |||||||| || || || || || ||||| | || || ||||| || ||||| Sbjct 12966 TTCACATTTTCGATTGTGTCTGAAGCCTCCACTTCGAGCGTGATAGTCTTTCCGGTCAAT 13025 Query 82791 GTCTTTACAAATATCTGCATT 82811 ||||| || || || |||||| Sbjct 13026 GTCTTCACGAAAATTTGCATT 13046 Score = 100 bits (110), Expect = 6e-16 Identities = 106/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 82671 CCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCT 82730 ||||||||||| |||| ||| ||||| || || ||||| || || |||||||| || || Sbjct 13991 CCAGCAAAGATAAGTCGTTGCTGATCGGGTGGGATTCCCTCTTTGTCTTGAATTTTCGCC 14050 Query 82731 TTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAAC 82790 |||||||||||||| ||||| | ||| || || | || ||||| || || || | Sbjct 14051 TTTACATTTTCAATTGTATCCGAGGCTTCCACCTCAAGGGTGATCGTTTTTCCAGTAAGT 14110 Query 82791 GTCTTTACAAATATCTGCAT 82810 || || || || |||||||| Sbjct 14111 GTTTTCACGAAGATCTGCAT 14130 Score = 98.7 bits (108), Expect = 2e-15 Identities = 108/144 (75%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 82668 TTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTT 82727 || ||||| ||||| || | || |||||||| || || |||||||| || || |||||| Sbjct 11497 TTACCAGCGAAGATAAGACGCTGCTGATCTGGTGGGATCCCTTCCTTGTCCTGGATCTTT 11556 Query 82728 GCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTC 82787 ||||| || || || || || || || || ||||||| || || ||||| || ||| Sbjct 11557 GCTTTGACGTTCTCGATAGTGTCCGAAGCCTCCACTTCCAGGGTAATGGTCTTTCCAGTC 11616 Query 82788 AACGTCTTTACAAATATCTGCATT 82811 | ||||| || || ||||||||| Sbjct 11617 AGGGTCTTGACGAAGATCTGCATT 11640 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 981805361708504