Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ancylostoma_20ceylanicum_20[genbank_20GCA_5F000688135.1_202014-03- 25] 1,736 sequences; 313,092,710 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq204 102 8e-17 seq117 93.3 4e-14 >seq204 Length=107262 Score = 102 bits (112), Expect = 8e-17 Identities = 109/144 (76%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 133518 TTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTT 133577 || || ||| | || || ||||||||||| |||||||| ||||||||||| ||||||| Sbjct 83917 TTACCTGCGAAGATTAGTCGCTGCTGGTCTGGAGGGATTCCTTCCTTGTCCTGGATCTTT 83976 Query 133578 TGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTC 133637 ||| | | |||| ||||| | | |||||| |||| |||| |||||||||||| Sbjct 83977 GCCTTTACATTTTCAATGGTGTCAGAAGCCTCCACTTCGAGCGTGATGGTTTTGCCGGTG 84036 Query 133638 AGAGTTTTTACGAAAATCTGCATG 133661 || || || || || || |||||| Sbjct 84037 AGCGTCTTGACAAAGATTTGCATG 84060 Score = 98.7 bits (108), Expect = 1e-15 Identities = 142/198 (72%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522 || ||||| ||||| |||||||| || || |||| | | | |||||||||||||| || Sbjct 82286 GTTGACTCCTTCTGGATATTGTAGTCCGACAGCGTGCGGCCA-TCCTCGAGCTGCTTTCC 82344 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 || | || | || |||||| || |||||||| || |||||||| ||||| ||| Sbjct 82345 GGCAAAGATCAACCTCTGCTGATCAGGAGGGATTCCCTCCTTGTCTTGAATCTTGGCCTT 82404 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 | | ||||| ||||| | | ||| || || | |||| || || || || || || Sbjct 82405 CACGTTCTCAATTGTGTCTGACGCCTCGACTTCTAACGTGATCGTCTTCCCAGTAAGGGT 82464 Query 133643 TTTTACGAAAATCTGCAT 133660 ||||| || |||||||| Sbjct 82465 CTTTACAAAGATCTGCAT 82482 Score = 82.4 bits (90), Expect = 7e-11 Identities = 102/140 (73%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 133521 CCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGC 133580 || ||| | || || ||||||||||| |||||||| ||||| ||||| ||||||| | Sbjct 82648 CCTGCGAAGATTAGTCGCTGCTGGTCTGGAGGGATTCCTTCTTTGTCCTGGATCTTTGCC 82707 Query 133581 TTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGA 133640 || | | |||| ||||| | | |||||| || | |||| || || ||||| || Sbjct 82708 TTTACATTTTCAATGGTGTCAGAAGCCTCCACCTCAAGCGTGATCGTCTTCCCGGTGAGG 82767 Query 133641 GTTTTTACGAAAATCTGCAT 133660 || || || || |||||||| Sbjct 82768 GTCTTCACAAAGATCTGCAT 82787 >seq117 Length=131150 Score = 93.3 bits (102), Expect = 4e-14 Identities = 107/144 (74%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 133517 CTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTT 133576 ||| || ||| | ||||||| |||||| || ||||| || ||||||||||| |||||| Sbjct 10763 CTTACCGGCGAAGATGAGCCTCTGCTGATCAGGAGGAATACCTTCCTTGTCCTGGATCTT 10822 Query 133577 TTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGT 133636 ||| | | ||||| || || | | ||| || || | ||||| ||| || ||||| Sbjct 10823 AGCCTTCACGTTCTCAATGGTATCAGAAGCCTCGACTTCAAGGGTGATGGTCTTCCCGGT 10882 Query 133637 CAGAGTTTTTACGAAAATCTGCAT 133660 || || || |||||||||||||| Sbjct 10883 CAAGGTCTTCACGAAAATCTGCAT 10906 Score = 93.3 bits (102), Expect = 4e-14 Identities = 107/144 (74%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 133517 CTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTT 133576 ||| || || | ||||||| |||||| || || ||||||||||||||||| ||||| Sbjct 11126 CTTACCGGCAAAGATGAGCCTCTGCTGATCTGGTGGGATGCCTTCCTTGTCTTGAATCTT 11185 Query 133577 TTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGT 133636 | ||| | | ||||| ||||| | | || || || | ||||| |||||| || || Sbjct 11186 TGCCTTTACGTTCTCAATAGTGTCCGAAGCTTCGACCTCCAAGGTGATGGTTTTTCCCGT 11245 Query 133637 CAGAGTTTTTACGAAAATCTGCAT 133660 ||| || || ||||| |||||||| Sbjct 11246 CAGCGTCTTCACGAAGATCTGCAT 11269 Score = 89.7 bits (98), Expect = 5e-13 Identities = 106/144 (74%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 133517 CTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTT 133576 ||| || ||| | || || |||||||| || || ||||| ||||||||||| |||||| Sbjct 11496 CTTACCAGCGAAGATAAGACGCTGCTGATCTGGTGGGATCCCTTCCTTGTCCTGGATCTT 11555 Query 133577 TTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGT 133636 | |||| | ||| | ||||| | | |||||| || | ||| | ||| || || || Sbjct 11556 TGCTTTGACGTTCTCGATAGTGTCCGAAGCCTCCACTTCCAGGGTAATGGTCTTTCCAGT 11615 Query 133637 CAGAGTTTTTACGAAAATCTGCAT 133660 ||| || || ||||| |||||||| Sbjct 11616 CAGGGTCTTGACGAAGATCTGCAT 11639 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483410309768640