Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ancylostoma_20ceylanicum_20[genbank_20GCA_5F000688135.1_202014-03- 25] 1,736 sequences; 313,092,710 total letters Query= NC_028094.1 Length=473558 Score E Sequences producing significant alignments: (Bits) Value seq1386 219 1e-51 seq204 136 1e-26 seq117 127 6e-24 seq1340 123 8e-23 seq1338 95.1 4e-14 >seq1386 Length=1167445 Score = 219 bits (242), Expect = 1e-51 Identities = 548/826 (66%), Gaps = 10/826 (1%) Strand=Plus/Minus Query 349607 GATGCTGTTATTACTGTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGAT 349666 || ||||| || || ||||| || || || || || | |||||| || || |||||| Sbjct 149734 GACGCTGTCATCACAGTACCTGCATACTTCAACGACTCACAGCGTCAGGCCACCAAAGAT 149675 Query 349667 GCTGGCAGCATTG-CGGGGTTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGC 349725 || || |||| | | || | ||||| || |||| || || || ||||||||||| || Sbjct 149674 GCAGG-AGCAATCTCAGGAATGAATGTACTTCGAATTATCAACGAGCCCACTGCTGCTGC 149616 Query 349726 AATTGCATATGGGCTTGATAAAATGAGTGACCAAGaaaaaaaTATTCTTATTTTTGATTT 349785 || || || || || || || | | || | ||| ||| | || || || ||| | Sbjct 149615 TATCGCCTACGGTCTCGACAAGAAGGGTACCGGAGAGCGAAACGTGCTCATCTTCGATCT 149556 Query 349786 AGGTGGTGGTACTTTTGATGTATCACTACTAACACTTGAAGAGGGAATTTTTGAAGTTAA 349845 || |||||||| |||||||| || | || || | || || ||||| || ||||| || Sbjct 149555 TGGAGGTGGTACCTTTGATGTGTCCATCCTGACCATCGAGGATGGAATCTTCGAAGTAAA 149496 Query 349846 AGCAACTGCTGGTGATACACATCTTGGTGGAGAAGATTTTGATAATCGTCTCGTTTCGCA 349905 | | |||||||||||||| || ||||| |||||||| || || || || | || || Sbjct 149495 ATCCACTGCTGGTGATACTCACCTTGGAGGAGAAGACTTCGACAACCGAATGGTCAACCA 149436 Query 349906 TTTTGTTAAAGAATTTAAGCGTCAAGC-TAAAATTGATATTGGAGATAATCCTAGAGCAA 349964 || || ||| || ||||| ||||| || | ||| | ||| ||| | || Sbjct 149435 CTTCGTCGCAGAGTTCAAGCG-CAAGCACAAGAAAGATCTCAACACTAACCCTCGTGCTC 149377 Query 349965 TGCGTCGCCTAAGAACTGCGTGTGAACGTGCTAAGCGTTCCTTATCATCTACTACCCAAA 350024 ||||||| || | || || || |||||||| |||||| || | || || | | || Sbjct 149376 TGCGTCGTCTCCGCACAGCTTGCGAACGTGCCAAGCGTACCCTCTCTTCCTCATCTCAGG 149317 Query 350025 CCTCTATTGAAATTGATTCTCTTGCTGATGGCAAAGATTTCTTTTCATCTATTACACGTG 350084 | ||||| ||||| || || || || || | || |||| | || || || | Sbjct 149316 CTTCTATCGAAATCGACTCACTCTTCGAGGGTATCGACTTCTACACTAACATCACTCGAG 149257 Query 350085 CTCGGTTTGAAGAATTATGTATGGATCTTTTTAGAGCAACAATGGATCCTGTGGAAAAAG 350144 | || ||||| ||| | || ||||| || | | || ||||| || || || ||| Sbjct 149256 CCCGCTTTGAGGAACTTTGCGCCGATCTGTTCCGTTCCACGATGGACCCCGTCGAGAAAT 149197 Query 350145 TATTAAAAGATGCAAAAATGTCCAAAAATCAGATTGATGAAGTAGTTTTAGTTGGTGGTT 350204 | | |||||| || ||| ||| | ||||| |||| | || | || || |||| Sbjct 149196 CCCTGAGAGATGCTAAGATGGACAAGAGCCAGATCCATGACATCGTCCTGGTCGGAGGTT 149137 Query 350205 CTACACGTATTCCAAAAGTTCAACAGTTACTATCTGAGTTTTTTAATGGCAAAGAACCTT 350264 | || ||||| || |||||||| || | || ||||| | || ||| || |||| Sbjct 149136 CCACCCGTATCCCGAAAGTTCAGAAGCTGCTTTCTGATCTCTTCTCTGGAAAGGAACTGA 149077 Query 350265 CTAGATCAATTAATCCAGATGAAGCTGTTGCATATGGTGCTGCTGTTCAGGCATCTATTT 350324 | || || || || ||||| || ||||| |||||||| ||||| || || |||| Sbjct 149076 ACAAGTCGATCAACCCTGATGAGGCCGTTGCCTATGGTGCCGCTGTCCAAGCTGCTATCC 149017 Query 350325 TATCTGGAAATAAGAGTTCTAA---AATTGATGATCTATTACTACTAGATGTAACTCCAC 350381 | || || | ||| ||| | | | | ||||| | || || ||||| | || | Sbjct 149016 TTTCCGGTGACAAG---TCTGAGGCAGTGCAAGATCTTCTGCTTCTTGATGTGGCACCTC 148960 Query 350382 TTTCGCTTGGATTAGAAACTTCTGGTGAAGTAATGACTGTTCTTAT 350427 | || ||||| | || || |||| | || ||||||| ||| || Sbjct 148959 TCTCACTTGGTATTGAGACAGCTGGAGGTGTGATGACTGCTCTGAT 148914 >seq204 Length=107262 Score = 136 bits (150), Expect = 1e-26 Identities = 158/213 (74%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 140526 AGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGATAATGTTCGCCCATCT 140585 ||||| ||||| ||||| ||||| || || ||||| || || || | || || ||||| Sbjct 82271 AGAACCAGATGGAGAGTTGACTCCTTCTGGATATTGTAGTCCGACAGCGTGCGGCCATCC 82330 Query 140586 TCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCC 140645 || || || ||||| |||||||| | | |||||||||||||| ||||| || || || Sbjct 82331 TCGAGCTGCTTTCCGGCAAAGATCAACCTCTGCTGATCAGGAGGGATTCCCTCCTTGTCT 82390 Query 140646 TGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTC 140705 ||||| || || || || || ||||| | || || | || ||||| | || | ||| Sbjct 82391 TGAATCTTGGCCTTCACGTTCTCAATTGTGTCTGACGCCTCGACTTCTAACGTGATCGTC 82450 Query 140706 TTTCCGGTTAGTGTTTTTACAAAAATCTGCATT 140738 || || || || || |||||||| ||||||||| Sbjct 82451 TTCCCAGTAAGGGTCTTTACAAAGATCTGCATT 82483 Score = 120 bits (132), Expect = 9e-22 Identities = 111/141 (79%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 140598 CCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCT 140657 || || |||||||| |||||||||||||| ||||| || |||||||| |||||||| || Sbjct 83250 CCTGCGAAGATTAGTCGTTGCTGATCAGGTGGAATACCCTCTTTATCTTGAATTTTGGCC 83309 Query 140658 TTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGT 140717 || ||||| ||||| | || || | || || || ||||| | |||||||| || || Sbjct 83310 TTGACATTCTCAATGGTGTCGGAGGCCTCGACCTCGAGTGTGATCGTCTTTCCAGTGAGG 83369 Query 140718 GTTTTTACAAAAATCTGCATT 140738 || || |||||||| |||||| Sbjct 83370 GTCTTGACAAAAATTTGCATT 83390 Score = 120 bits (132), Expect = 9e-22 Identities = 113/144 (78%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 140595 TTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATTTTA 140654 || || |||||||| | || |||||||| ||||||||||||||||| || || |||||| Sbjct 85970 TTACCTGCAAAGATCAAGCGCTGCTGATCTGGAGGAATTCCTTCTTTGTCTTGGATTTTA 86029 Query 140655 GCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTCCGGTT 140714 || || ||||| ||||| | || |||| || ||||| || |||| || ||||| || Sbjct 86030 GCCTTGACATTCTCAATGGTGTCCGATGCCTCGACTTCGAGGGTAATCGTTTTTCCAGTA 86089 Query 140715 AGTGTTTTTACAAAAATCTGCATT 140738 || ||||| || ||||| |||||| Sbjct 86090 AGCGTTTTAACGAAAATTTGCATT 86113 Score = 114 bits (126), Expect = 4e-20 Identities = 110/141 (78%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 140598 CCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCT 140657 || || |||||||| || ||||| || ||||| ||||||||||| ||||| || || || Sbjct 82648 CCTGCGAAGATTAGTCGCTGCTGGTCTGGAGGGATTCCTTCTTTGTCCTGGATCTTTGCC 82707 Query 140658 TTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGT 140717 |||||||| ||||| | ||||| | || || ||||| || | ||||| ||||| || Sbjct 82708 TTTACATTTTCAATGGTGTCAGAAGCCTCCACCTCAAGCGTGATCGTCTTCCCGGTGAGG 82767 Query 140718 GTTTTTACAAAAATCTGCATT 140738 || || ||||| ||||||||| Sbjct 82768 GTCTTCACAAAGATCTGCATT 82788 Score = 100 bits (110), Expect = 9e-16 Identities = 106/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 140598 CCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCT 140657 |||||||| || | || ||||||||||| ||||||||||| || || || |||||||| Sbjct 83551 CCAGCAAAAATCAATCGCTGCTGATCAGGTGGAATTCCTTCCTTGTCTTGGATTTTAGCC 83610 Query 140658 TTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGT 140717 || ||||| || || | ||||| | || ||||| || || | || || ||||| || Sbjct 83611 TTGACATTTTCGATAGTGTCAGACGCCTCCACTTCGAGCGTGATGGTTTTGCCGGTGAGC 83670 Query 140718 GTTTTTACAAAAATCTGCAT 140737 || || ||||| || ||||| Sbjct 83671 GTCTTGACAAAGATTTGCAT 83690 Score = 93.3 bits (102), Expect = 1e-13 Identities = 105/141 (74%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 140598 CCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCT 140657 || ||||||||||| || ||||| || ||||| || || || || |||||||| || ||| Sbjct 82942 CCTGCAAAGATTAGTCGCTGCTGGTCTGGAGGGATCCCCTCCTTGTCCTGAATCTTGGCT 83001 Query 140658 TTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGT 140717 || || || || || | ||||| | ||| || || || || | || ||||| || || Sbjct 83002 TTCACGTTCTCGATGGTGTCAGACGCTTCGACCTCCAGGGTGATAGTTTTTCCTGTGAGG 83061 Query 140718 GTTTTTACAAAAATCTGCATT 140738 || || ||||| || |||||| Sbjct 83062 GTCTTCACAAAGATTTGCATT 83082 Score = 87.8 bits (96), Expect = 5e-12 Identities = 81/103 (79%), Gaps = 0/103 (0%) Strand=Plus/Plus Query 140503 TTTACATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTAT 140562 ||| ||| |||||||| | || || ||||||||||| || || || ||||| || || | Sbjct 84053 TTTGCATGCCACCACGGAGTCGGAGCACAAGATGAAGCGTGGATTCCTTTTGGATGTTGT 84112 Query 140563 AATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAA 140605 ||||||| || || || ||||| |||||||| ||||| | ||| Sbjct 84113 AATCAGACAAAGTGCGTCCATCCTCAAGTTGCTTTCCTGAAAA 84155 >seq117 Length=131150 Score = 127 bits (140), Expect = 6e-24 Identities = 112/140 (80%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 140598 CCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCT 140657 ||||||||||| || ||||||||||| || || ||||| ||||| || |||||||| || Sbjct 13991 CCAGCAAAGATAAGTCGTTGCTGATCGGGTGGGATTCCCTCTTTGTCTTGAATTTTCGCC 14050 Query 140658 TTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGT 140717 |||||||| ||||| | ||| || | ||| || ||||| || | || ||||| || ||| Sbjct 14051 TTTACATTTTCAATTGTATCCGAGGCTTCCACCTCAAGGGTGATCGTTTTTCCAGTAAGT 14110 Query 140718 GTTTTTACAAAAATCTGCAT 140737 ||||| || || |||||||| Sbjct 14111 GTTTTCACGAAGATCTGCAT 14130 Score = 111 bits (122), Expect = 5e-19 Identities = 111/144 (77%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 140595 TTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATTTTA 140654 || || || ||||| || | ||||||||||||||||| ||||| || ||||| || ||| Sbjct 10764 TTACCGGCGAAGATGAGCCTCTGCTGATCAGGAGGAATACCTTCCTTGTCCTGGATCTTA 10823 Query 140655 GCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTCCGGTT 140714 || || || || ||||| | |||||| | || |||||||| || | ||||| ||||| Sbjct 10824 GCCTTCACGTTCTCAATGGTATCAGAAGCCTCGACTTCAAGGGTGATGGTCTTCCCGGTC 10883 Query 140715 AGTGTTTTTACAAAAATCTGCATT 140738 | || || || |||||||||||| Sbjct 10884 AAGGTCTTCACGAAAATCTGCATT 10907 Score = 102 bits (112), Expect = 2e-16 Identities = 107/141 (76%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 140598 CCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCT 140657 || |||||||| || || |||||||| || |||||||| ||||| || || || || ||| Sbjct 12906 CCGGCAAAGATAAGTCGCTGCTGATCTGGTGGAATTCCCTCTTTGTCTTGGATCTTTGCT 12965 Query 140658 TTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGT 140717 || ||||| || || | || || | || ||||| || || | ||||||||||| | | Sbjct 12966 TTCACATTTTCGATTGTGTCTGAAGCCTCCACTTCGAGCGTGATAGTCTTTCCGGTCAAT 13025 Query 140718 GTTTTTACAAAAATCTGCATT 140738 || || || ||||| |||||| Sbjct 13026 GTCTTCACGAAAATTTGCATT 13046 Score = 96.9 bits (106), Expect = 1e-14 Identities = 106/141 (75%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 140598 CCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCT 140657 ||||| ||||| |||||||||||||| || || || || || ||||| || || || ||| Sbjct 12503 CCAGCGAAGATGAGACGTTGCTGATCGGGTGGGATGCCCTCCTTATCTTGGATCTTGGCT 12562 Query 140658 TTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGT 140717 || || || || || | ||| || | ||||| || || || | |||||||| || || Sbjct 12563 TTCACGTTCTCGATTGTATCTGAAGCCTCAACCTCCAGAGTGATGGTCTTTCCTGTCAGC 12622 Query 140718 GTTTTTACAAAAATCTGCATT 140738 || || || || ||||||||| Sbjct 12623 GTCTTCACGAAGATCTGCATT 12643 >seq1340 Length=4405878 Score = 123 bits (136), Expect = 8e-23 Identities = 254/376 (68%), Gaps = 5/376 (1%) Strand=Plus/Plus Query 349514 GAACAAAAACAATTTTTACCCGAAGAAATTTCATCAATGGTTTTAGTTAAAATGAAGGAA 349573 || || || || ||| |||||||| || || | |||||| | | || |||||||| Sbjct 3103882 GACCAGAAGCAGTTTACTCCCGAAGAGATCTCCGCCATGGTTCTCGGAAAGATGAAGGAG 3103941 Query 349574 ATTGCTGAAGCATATTTAGGTGAAACAGTAACTGATGCTGTTATTACTGTACCAGCCTAT 349633 || || || | || | || | ||| | | |||||| | || || || ||||| Sbjct 3103942 ATCGCCGAGTCTTACCTTGGAAAGGAAGTGAAACACGCTGTTGTCACAGTGCCTGCCTAC 3104001 Query 349634 TTTAATGATGCCCAGCGTTCTGCAACAAAAGATGCTGGCAGCATTGCGGGGTTAAATGTT 349693 || || |||||||||||| || || || ||||| || | |||||| || || |||||| Sbjct 3104002 TTCAACGATGCCCAGCGTCAAGCCACCAAGGATGCCGGAACCATTGCTGGATTGAATGTT 3104061 Query 349694 CTAAGAATGATTAATGAACCCACTGCTGCAGCAATTGCATATGGGCTTGATAA-AATGAG 349752 | |||| || || || || || || || || || || || || ||||| || || ||| Sbjct 3104062 GTCCGAATCATCAACGAGCCTACAGCAGCCGCCATCGCCTACGGTCTTGACAAGAAGGAG 3104121 Query 349753 TGACCAAGaaaaaaaTATTCTTATTTTTGATTTAGGTGGTGGTACTTTTGATGTATCACT 349812 | ||| || || ||| |||| ||| | || ||||||||||| ||||| || | Sbjct 3104122 GG----AGAGCGCAACATCCTTGTTTTCGATCTTGGAGGTGGTACTTTCGATGTCTCTAT 3104177 Query 349813 ACTAACACTTGAAGAGGGAATTTTTGAAGTTAAAGCAACTGCTGGTGATACACATCTTGG 349872 || || |||| | ||| | || ||||| || || || || || || | || Sbjct 3104178 GCTCACCATTGACAACGGAGTGTTCGAAGTGTTGGCTACCAACGGAGACACTCACTTGGG 3104237 Query 349873 TGGAGAAGATTTTGAT 349888 ||||||||||| ||| Sbjct 3104238 AGGAGAAGATTTCGAT 3104253 >seq1338 Length=4677894 Score = 95.1 bits (104), Expect = 4e-14 Identities = 105/140 (75%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 140598 CCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCT 140657 ||||| ||||| ||||| ||||||||||| || ||||| || || || || || || || Sbjct 229760 CCAGCGAAGATGAGACGCTGCTGATCAGGTGGGATTCCCTCCTTGTCTTGGATCTTGGCC 229701 Query 140658 TTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGT 140717 || ||||| || |||| || || | |||||| || || || | |||||| || || || Sbjct 229700 TTCACATTCTCGATCGTGTCCGAGGCTTCAACCTCGAGCGTGATTGTCTTCCCCGTGAGA 229641 Query 140718 GTTTTTACAAAAATCTGCAT 140737 || || || || || ||||| Sbjct 229640 GTCTTCACGAAGATTTGCAT 229621 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1515220696954008