Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ancylostoma_20ceylanicum_20[genbank_20GCA_5F000688135.1_202014-03- 25] 1,736 sequences; 313,092,710 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq204 150 2e-31 seq117 109 6e-19 seq1338 104 3e-17 >seq204 Length=107262 Score = 150 bits (166), Expect = 2e-31 Identities = 170/228 (75%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 |||||| |||||||| ||||| ||||| || ||||| || || | || || ||| | Sbjct 82483 AATGCAGATCTTTGTAAAGACCCTTACTGGGAAGACGATCACGTTAGAAGTCGAGGCGTC 82424 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 || | |||| || ||||||| || ||||| |||||||||||||| ||||| || || Sbjct 82423 AGACACAATTGAGAACGTGAAGGCCAAGATTCAAGACAAGGAGGGAATCCCTCCTGATCA 82364 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584 |||| | | || ||||| || ||||| |||||||||| || || || | ||||| || Sbjct 82363 GCAGAGGTTGATCTTTGCCGGAAAGCAGCTCGAGGATGGCCGCACGCTGTCGGACTACAA 82304 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 | |||| ||||| || ||||| ||||| || | ||||| || || || Sbjct 82303 TATCCAGAAGGAGTCAACTCTCCATCTGGTTCTTCGTCTCCGTGGAGG 82256 Score = 141 bits (156), Expect = 1e-28 Identities = 117/143 (82%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||||||||||||||||||||| |||||||| || || || || || || ||| | | Sbjct 84059 ATGCAAATCTTTGTCAAGACGCTCACCGGCAAAACCATCACGCTCGAAGTGGAGGCTTCT 84000 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||||| |||| | ||||| || || ||||||||||| ||||| |||||||||||| Sbjct 83999 GACACCATTGAAAATGTAAAGGCAAAGATCCAGGACAAGGAAGGAATCCCTCCAGACCAG 83940 Query 27526 CAGCGTCTAATTTTTGCTGGTAA 27548 ||||| ||||| || || ||||| Sbjct 83939 CAGCGACTAATCTTCGCAGGTAA 83917 Score = 132 bits (146), Expect = 5e-26 Identities = 115/143 (80%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 |||||| |||||||| ||||| || ||||| ||||| || || |||||||| ||| | Sbjct 82788 AATGCAGATCTTTGTGAAGACCCTCACCGGGAAGACGATCACGCTTGAGGTGGAGGCTTC 82729 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 ||| | ||||| |||| | ||||| || || |||||||| || ||||| ||||||||||| Sbjct 82728 TGACACCATTGAAAATGTAAAGGCAAAGATCCAGGACAAAGAAGGAATCCCTCCAGACCA 82669 Query 27525 GCAGCGTCTAATTTTTGCTGGTA 27547 |||||| ||||| || || |||| Sbjct 82668 GCAGCGACTAATCTTCGCAGGTA 82646 Score = 131 bits (144), Expect = 2e-25 Identities = 114/142 (80%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||||||||||||||||||||| |||||||| || || || || || || ||| | | Sbjct 83690 ATGCAAATCTTTGTCAAGACGCTCACCGGCAAAACCATCACGCTCGAAGTGGAGGCGTCT 83631 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | || | |||| | ||||||||||| || |||||||| |||||||| || || ||| Sbjct 83630 GACACTATCGAAAATGTCAAGGCTAAAATCCAAGACAAGGAAGGAATTCCACCTGATCAG 83571 Query 27526 CAGCGTCTAATTTTTGCTGGTA 27547 ||||| | ||||||||||||| Sbjct 83570 CAGCGATTGATTTTTGCTGGTA 83549 Score = 123 bits (136), Expect = 3e-23 Identities = 113/143 (79%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 ||||||||||||||| ||||| || || || || ||||| || || ||||| || | Sbjct 83082 AATGCAAATCTTTGTGAAGACCCTCACAGGAAAAACTATCACCCTGGAGGTCGAAGCGTC 83023 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 ||| | ||| | || |||| || || ||||||||||||||||| || ||||||||||| Sbjct 83022 TGACACCATCGAGAACGTGAAAGCCAAGATTCAGGACAAGGAGGGGATCCCTCCAGACCA 82963 Query 27525 GCAGCGTCTAATTTTTGCTGGTA 27547 |||||| ||||| ||||| |||| Sbjct 82962 GCAGCGACTAATCTTTGCAGGTA 82940 Score = 118 bits (130), Expect = 1e-21 Identities = 113/145 (78%), Gaps = 0/145 (0%) Strand=Plus/Minus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 ||||||||| || || || |||||||| || || || ||||| || || || ||| || Sbjct 86113 AATGCAAATTTTCGTTAAAACGCTTACTGGAAAAACGATTACCCTCGAAGTCGAGGCATC 86054 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 || | ||||| ||| | ||||||||||| || ||||| || |||||||||||||| || Sbjct 86053 GGACACCATTGAGAATGTCAAGGCTAAAATCCAAGACAAAGAAGGAATTCCTCCAGATCA 85994 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAG 27549 |||||| | || ||||| |||||| Sbjct 85993 GCAGCGCTTGATCTTTGCAGGTAAG 85969 Score = 114 bits (126), Expect = 1e-20 Identities = 111/143 (78%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 |||||| |||||||||||||| || || || ||||| || || || ||||| ||| | Sbjct 85779 AATGCAGATCTTTGTCAAGACCCTCACTGGAAAGACGATCACACTCGAGGTCGAGGCCTC 85720 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 || | ||||| ||| | ||||| || ||||||||||| ||||| || ||||| ||||| Sbjct 85719 CGACACCATTGAGAATGTCAAGGCCAAGATTCAGGACAAAGAGGGTATCCCTCCTGACCA 85660 Query 27525 GCAGCGTCTAATTTTTGCTGGTA 27547 ||| || || ||||| || |||| Sbjct 85659 GCAACGACTCATTTTCGCAGGTA 85637 Score = 105 bits (116), Expect = 8e-18 Identities = 109/143 (76%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 ||||||||| ||||||||||| || || || ||||| || || || ||||| ||| | Sbjct 83390 AATGCAAATTTTTGTCAAGACCCTCACTGGAAAGACGATCACACTCGAGGTCGAGGCCTC 83331 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 || | ||||| ||| | ||||| |||||||| || || ||||| ||||| || || || Sbjct 83330 CGACACCATTGAGAATGTCAAGGCCAAAATTCAAGATAAAGAGGGTATTCCACCTGATCA 83271 Query 27525 GCAGCGTCTAATTTTTGCTGGTA 27547 ||| || ||||| || || |||| Sbjct 83270 GCAACGACTAATCTTCGCAGGTA 83248 >seq117 Length=131150 Score = 109 bits (120), Expect = 6e-19 Identities = 111/145 (77%), Gaps = 0/145 (0%) Strand=Plus/Minus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 |||||| || || || ||||| | ||||| ||||| || || ||||| || ||| | Sbjct 10907 AATGCAGATTTTCGTGAAGACCTTGACCGGGAAGACCATCACCCTTGAAGTCGAGGCTTC 10848 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 ||||| ||||| || |||||||||| || ||||||||||| || |||||||| || || Sbjct 10847 TGATACCATTGAGAACGTGAAGGCTAAGATCCAGGACAAGGAAGGTATTCCTCCTGATCA 10788 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAG 27549 |||| | || || || || |||||| Sbjct 10787 GCAGAGGCTCATCTTCGCCGGTAAG 10763 Score = 109 bits (120), Expect = 6e-19 Identities = 111/145 (77%), Gaps = 0/145 (0%) Strand=Plus/Minus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 |||||| ||||| ||||||||||| || || ||||| || || || ||||| || | Sbjct 13376 AATGCAGATCTTCGTCAAGACGCTGACTGGAAAGACCATCACCCTGGAGGTCGAAGCCTC 13317 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 || | ||||| || | ||||| ||||| ||||||||||| || || || |||||||| Sbjct 13316 GGACACCATTGAGAACGTAAAGGCCAAAATCCAGGACAAGGAAGGGATCCCACCAGACCA 13257 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAG 27549 ||| || || || ||||| |||||| Sbjct 13256 GCAACGCCTTATCTTTGCCGGTAAG 13232 Score = 98.7 bits (108), Expect = 1e-15 Identities = 107/142 (75%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 ||||||||| || || ||||| | ||||| |||||||| || || || || ||| | Sbjct 13046 AATGCAAATTTTCGTGAAGACATTGACCGGAAAGACTATCACGCTCGAAGTGGAGGCTTC 12987 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 || | || | |||| |||| || || || || ||||| ||||||||||| ||||| || Sbjct 12986 AGACACAATCGAAAATGTGAAAGCAAAGATCCAAGACAAAGAGGGAATTCCACCAGATCA 12927 Query 27525 GCAGCGTCTAATTTTTGCTGGT 27546 |||||| || || ||||| ||| Sbjct 12926 GCAGCGACTTATCTTTGCCGGT 12905 Score = 96.9 bits (106), Expect = 4e-15 Identities = 113/153 (74%), Gaps = 0/153 (0%) Strand=Plus/Minus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 |||||| ||||| || ||||| || || || ||||| || || || || |||||| | Sbjct 11980 AATGCAGATCTTCGTTAAGACCCTGACTGGAAAGACCATCACCCTGGAAGTTGAGGCTTC 11921 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 |||| ||| | || | || || || || ||||| ||||| || || || ||||| || Sbjct 11920 GGATACCATCGAGAACGTCAAAGCAAAGATCCAGGATAAGGAAGGGATCCCACCAGATCA 11861 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGA 27557 ||||||||| || || ||||||||| ||| || Sbjct 11860 GCAGCGTCTCATCTTCGCTGGTAAGATACTTGA 11828 Score = 95.1 bits (104), Expect = 1e-14 Identities = 108/145 (74%), Gaps = 0/145 (0%) Strand=Plus/Minus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 |||||| ||||| |||||||| || || || ||||| ||||| || || || ||| | Sbjct 11640 AATGCAGATCTTCGTCAAGACCCTGACTGGAAAGACCATTACCCTGGAAGTGGAGGCTTC 11581 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 || | || | || | || || || || ||||||||||| || || || ||||| || Sbjct 11580 GGACACTATCGAGAACGTCAAAGCAAAGATCCAGGACAAGGAAGGGATCCCACCAGATCA 11521 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAG 27549 ||||||||| || || ||||||||| Sbjct 11520 GCAGCGTCTTATCTTCGCTGGTAAG 11496 Score = 95.1 bits (104), Expect = 1e-14 Identities = 108/145 (74%), Gaps = 0/145 (0%) Strand=Plus/Minus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 |||||||||||| || |||||||| || || ||||| || || || || || ||| | Sbjct 12319 AATGCAAATCTTCGTGAAGACGCTGACAGGAAAGACCATCACCCTGGAAGTGGAGGCTTC 12260 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 || | || | || | || || ||||| |||||||| ||||| ||||| || ||||| Sbjct 12259 GGACACTATCGAGAACGTCAAAGCAAAAATCCAGGACAAAGAGGGGATTCCACCGGACCA 12200 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAG 27549 |||||| || || ||||| ||| || Sbjct 12199 GCAGCGCCTTATCTTTGCCGGTGAG 12175 >seq1338 Length=4677894 Score = 104 bits (114), Expect = 3e-17 Identities = 108/142 (76%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||||||||| || ||||| || || || ||||| || || || |||||||| | Sbjct 229621 ATGCAAATCTTCGTGAAGACTCTCACGGGGAAGACAATCACGCTCGAGGTTGAAGCCTCG 229680 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | || | ||| ||||||| || || || |||||||||||||| || || || ||| Sbjct 229681 GACACGATCGAGAATGTGAAGGCCAAGATCCAAGACAAGGAGGGAATCCCACCTGATCAG 229740 Query 27526 CAGCGTCTAATTTTTGCTGGTA 27547 |||||||| || || ||||||| Sbjct 229741 CAGCGTCTCATCTTCGCTGGTA 229762 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570298024264320