Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ancylostoma_20ceylanicum_20[genbank_20GCA_5F000688135.1_202014-03- 25] 1,736 sequences; 313,092,710 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq204 98.7 9e-16 seq117 84.2 2e-11 >seq204 Length=107262 Score = 98.7 bits (108), Expect = 9e-16 Identities = 159/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| |||||||| || || || || ||| | || || | ||||| || |||| Sbjct 82482 ATGCAGATCTTTGTAAAGACCCTTACTGGGAAGACGATCACGTTAGAAGTCGAGGCGTCA 82423 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | ||||||| || || || ||||||||||| || || || || || ||||| Sbjct 82422 GACACAATTGAGAACGTGAAGGCCAAGATTCAAGACAAGGAGGGAATCCCTCCTGATCAG 82363 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||| | || || | ||||| || || | || || | || | || || ||||| Sbjct 82362 CAGAGGTTGATCTTTGCCGGAAAGCAGCTCGAGGATGGCCGCACGCTGTCGGACTACAAT 82303 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCA 27216 || || |||||||| || | ||| ||||| | ||| | || || |||| Sbjct 82302 ATCCAGAAGGAGTCAACTCTCCATCTGGTTCTTCGTCTCCGTGGAGGCA 82254 Score = 84.2 bits (92), Expect = 2e-11 Identities = 97/131 (74%), Gaps = 0/131 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || || || ||||| || || || || | ||||| || ||||| || | || Sbjct 86112 ATGCAAATTTTCGTTAAAACGCTTACTGGAAAAACGATTACCCTCGAAGTCGAGGCATCG 86053 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | ||||||| ||||| ||||| |||||||||||||| || || || ||||| Sbjct 86052 GACACCATTGAGAATGTCAAGGCTAAAATCCAAGACAAAGAAGGAATTCCTCCAGATCAG 85993 Query 27108 CAGCGTTTAAT 27118 ||||| || || Sbjct 85992 CAGCGCTTGAT 85982 Score = 82.4 bits (90), Expect = 7e-11 Identities = 102/140 (73%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| ||||| || || || ||||| ||| | || || ||||| ||||| | || Sbjct 82787 ATGCAGATCTTTGTGAAGACCCTCACCGGGAAGACGATCACGCTTGAGGTGGAGGCTTCT 82728 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | ||||| | || || ||| || || ||||||||||| || || || || || Sbjct 82727 GACACCATTGAAAATGTAAAGGCAAAGATCCAGGACAAAGAAGGAATCCCTCCAGACCAG 82668 Query 27108 CAGCGTTTAATATACGCCGG 27127 ||||| |||| | ||| || Sbjct 82667 CAGCGACTAATCTTCGCAGG 82648 Score = 82.4 bits (90), Expect = 7e-11 Identities = 102/140 (73%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || ||||| || || || || || ||| | || || || || || || | ||| Sbjct 83389 ATGCAAATTTTTGTCAAGACCCTCACTGGAAAGACGATCACACTCGAGGTCGAGGCCTCC 83330 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | ||||||| ||||| ||||||||||| ||||| || || ||||| ||||| Sbjct 83329 GACACCATTGAGAATGTCAAGGCCAAAATTCAAGATAAAGAGGGTATTCCACCTGATCAG 83270 Query 27108 CAGCGTTTAATATACGCCGG 27127 || || |||| | ||| || Sbjct 83269 CAACGACTAATCTTCGCAGG 83250 >seq117 Length=131150 Score = 84.2 bits (92), Expect = 2e-11 Identities = 94/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 ||||||||| || || ||||| || || || || | || || ||||| |||||| | || Sbjct 14131 CATGCAGATCTTCGTGAAAACACTTACTGGAAAAACGATCACCCTTGAGGTGGAAGCCTC 14072 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 || | ||||| | || || ||||||||||||||||| || || ||||||||||| Sbjct 14071 GGATACAATTGAAAATGTAAAGGCGAAAATTCAAGACAAAGAGGGAATCCCACCCGATCA 14012 Query 27107 ACAGCG 27112 || || Sbjct 14011 GCAACG 14006 Score = 82.4 bits (90), Expect = 7e-11 Identities = 93/125 (74%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || || || || || ||||||| ||| |||| || || |||||||| | || Sbjct 13045 ATGCAAATTTTCGTGAAGACATTGACCGGAAAGACTATCACGCTCGAAGTGGAGGCTTCA 12986 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | || || | || ||| ||| || ||||||||||| || || ||||| ||||| Sbjct 12985 GACACAATCGAAAATGTGAAAGCAAAGATCCAAGACAAAGAGGGAATTCCACCAGATCAG 12926 Query 27108 CAGCG 27112 ||||| Sbjct 12925 CAGCG 12921 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434908962270720