Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ancylostoma_20ceylanicum_20[genbank_20GCA_5F000688135.1_202014-03- 25] 1,736 sequences; 313,092,710 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq204 132 1e-25 seq1338 122 2e-22 seq117 122 2e-22 >seq204 Length=107262 Score = 132 bits (146), Expect = 1e-25 Identities = 165/226 (73%), Gaps = 0/226 (0%) Strand=Plus/Plus Query 210890 TCAACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAG 210949 || ||| || | || || || || ||||| ||||| || ||||| || || |||| || Sbjct 82258 TCCACGGAGACGAAGAACCAGATGGAGAGTTGACTCCTTCTGGATATTGTAGTCCGACAG 82317 Query 210950 GGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAAC 211009 || | ||||| || |||||||| || || ||||| | | || || |||||||| | Sbjct 82318 CGTGCGGCCATCCTCGAGCTGCTTTCCGGCAAAGATCAACCTCTGCTGATCAGGAGGGAT 82377 Query 211010 TCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTC 211069 ||| |||||||| || ||||| |||||||| || || ||||| || || || || Sbjct 82378 TCCCTCCTTGTCTTGAATCTTGGCCTTCACGTTCTCAATTGTGTCTGACGCCTCGACTTC 82437 Query 211070 GAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCATT 211115 | ||||||||||| || || || ||||||||||| | ||||||| Sbjct 82438 TAACGTGATCGTCTTCCCAGTAAGGGTCTTTACAAAGATCTGCATT 82483 Score = 132 bits (146), Expect = 1e-25 Identities = 114/141 (81%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 210975 CCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGT 211034 ||||||||||| || || || ||||| ||||| | |||||| ||||||||||||||| Sbjct 82648 CCTGCGAAGATTAGTCGCTGCTGGTCTGGAGGGATTCCTTCTTTGTCCTGGATCTTTGCC 82707 Query 211035 TTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGA 211094 || || ||||| ||||||||||| || ||||| || ||||||||||| || ||||| Sbjct 82708 TTTACATTTTCAATGGTGTCAGAAGCCTCCACCTCAAGCGTGATCGTCTTCCCGGTGAGG 82767 Query 211095 GTCTTTACAAACACCTGCATT 211115 ||||| ||||| | ||||||| Sbjct 82768 GTCTTCACAAAGATCTGCATT 82788 Score = 123 bits (136), Expect = 6e-23 Identities = 112/141 (79%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 210975 CCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGT 211034 ||||| ||||| || || || ||||| ||||| | || ||||||||||| ||||| | Sbjct 82942 CCTGCAAAGATTAGTCGCTGCTGGTCTGGAGGGATCCCCTCCTTGTCCTGAATCTTGGCT 83001 Query 211035 TTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGA 211094 |||||||| |||||||||||||| ||| ||||| || ||||| || ||||| ||||| Sbjct 83002 TTCACGTTCTCGATGGTGTCAGACGCTTCGACCTCCAGGGTGATAGTTTTTCCTGTGAGG 83061 Query 211095 GTCTTTACAAACACCTGCATT 211115 ||||| ||||| | |||||| Sbjct 83062 GTCTTCACAAAGATTTGCATT 83082 Score = 123 bits (136), Expect = 6e-23 Identities = 113/143 (79%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 210972 TTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTT 211031 || ||||||||||| || || || ||||| ||||| | |||||||||||||||||||||| Sbjct 83917 TTACCTGCGAAGATTAGTCGCTGCTGGTCTGGAGGGATTCCTTCCTTGTCCTGGATCTTT 83976 Query 211032 TGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTG 211091 || || ||||| ||||||||||| || || ||||| ||||| || || || ||| Sbjct 83977 GCCTTTACATTTTCAATGGTGTCAGAAGCCTCCACTTCGAGCGTGATGGTTTTGCCGGTG 84036 Query 211092 AGAGTCTTTACAAACACCTGCAT 211114 || ||||| ||||| | ||||| Sbjct 84037 AGCGTCTTGACAAAGATTTGCAT 84059 Score = 123 bits (136), Expect = 6e-23 Identities = 112/141 (79%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 210975 CCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGT 211034 |||||||| || || ||||| ||||||||||| | || || |||||||| ||||| Sbjct 85639 CCTGCGAAAATGAGTCGTTGCTGGTCAGGAGGGATACCCTCTTTGTCCTGAATCTTGGCC 85698 Query 211035 TTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGA 211094 || || || || |||||||| ||| || |||||||| |||||||||||||| ||||| Sbjct 85699 TTGACATTCTCAATGGTGTCGGAGGCCTCGACCTCGAGTGTGATCGTCTTTCCAGTGAGG 85758 Query 211095 GTCTTTACAAACACCTGCATT 211115 ||||| ||||| | ||||||| Sbjct 85759 GTCTTGACAAAGATCTGCATT 85779 Score = 105 bits (116), Expect = 2e-17 Identities = 108/141 (77%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 210975 CCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGT 211034 ||||||||||| || ||||| || ||||| |||| || || || || || || || Sbjct 83250 CCTGCGAAGATTAGTCGTTGCTGATCAGGTGGAATACCCTCTTTATCTTGAATTTTGGCC 83309 Query 211035 TTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGA 211094 || || || || |||||||| ||| || |||||||| |||||||||||||| ||||| Sbjct 83310 TTGACATTCTCAATGGTGTCGGAGGCCTCGACCTCGAGTGTGATCGTCTTTCCAGTGAGG 83369 Query 211095 GTCTTTACAAACACCTGCATT 211115 ||||| ||||| | |||||| Sbjct 83370 GTCTTGACAAAAATTTGCATT 83390 Score = 91.5 bits (100), Expect = 3e-13 Identities = 95/125 (76%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 210990 CGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATG 211049 || || || ||||| |||| |||||||||||| ||||| || || || |||||||| Sbjct 83566 CGCTGCTGATCAGGTGGAATTCCTTCCTTGTCTTGGATTTTAGCCTTGACATTTTCGATA 83625 Query 211050 GTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACC 211109 |||||||| || || ||||| ||||| || || || ||||| ||||| ||||| | Sbjct 83626 GTGTCAGACGCCTCCACTTCGAGCGTGATGGTTTTGCCGGTGAGCGTCTTGACAAAGATT 83685 Query 211110 TGCAT 211114 ||||| Sbjct 83686 TGCAT 83690 >seq1338 Length=4677894 Score = 122 bits (134), Expect = 2e-22 Identities = 111/140 (79%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 210975 CCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGT 211034 || |||||||| || || || || ||||| || | ||| |||||||| |||||||| Sbjct 229760 CCAGCGAAGATGAGACGCTGCTGATCAGGTGGGATTCCCTCCTTGTCTTGGATCTTGGCC 229701 Query 211035 TTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGA 211094 ||||| || ||||| ||||| ||| |||||||||||| ||||| ||||| ||||||||| Sbjct 229700 TTCACATTCTCGATCGTGTCCGAGGCTTCAACCTCGAGCGTGATTGTCTTCCCCGTGAGA 229641 Query 211095 GTCTTTACAAACACCTGCAT 211114 ||||| || || | ||||| Sbjct 229640 GTCTTCACGAAGATTTGCAT 229621 >seq117 Length=131150 Score = 122 bits (134), Expect = 2e-22 Identities = 114/145 (79%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 210971 CTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTT 211030 ||| || || |||||||||||||| ||||| || || | ||||||||||||||||| || Sbjct 13232 CTTACCGGCAAAGATAAGGCGTTGCTGGTCTGGTGGGATCCCTTCCTTGTCCTGGATTTT 13291 Query 211031 TTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGT 211090 || ||||| || |||||||| ||| ||| ||||| || ||||| |||||||| || Sbjct 13292 GGCCTTTACGTTCTCAATGGTGTCCGAGGCTTCGACCTCCAGGGTGATGGTCTTTCCAGT 13351 Query 211091 GAGAGTCTTTACAAACACCTGCATT 211115 || ||||| || || | ||||||| Sbjct 13352 CAGCGTCTTGACGAAGATCTGCATT 13376 Score = 109 bits (120), Expect = 1e-18 Identities = 111/145 (77%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 210971 CTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTT 211030 ||| || ||||||||||| || || || || || || | |||||||||||||||||||| Sbjct 11496 CTTACCAGCGAAGATAAGACGCTGCTGATCTGGTGGGATCCCTTCCTTGTCCTGGATCTT 11555 Query 211031 TTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGT 211090 | ||| ||||| ||||| ||||| || || || || || || || |||||||| || Sbjct 11556 TGCTTTGACGTTCTCGATAGTGTCCGAAGCCTCCACTTCCAGGGTAATGGTCTTTCCAGT 11615 Query 211091 GAGAGTCTTTACAAACACCTGCATT 211115 || ||||| || || | ||||||| Sbjct 11616 CAGGGTCTTGACGAAGATCTGCATT 11640 Score = 109 bits (120), Expect = 1e-18 Identities = 111/145 (77%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 210971 CTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTT 211030 ||| || |||||||| || || || || || || || | |||||||| ||||||||||| Sbjct 11836 CTTACCAGCGAAGATGAGACGCTGCTGATCTGGTGGGATCCCTTCCTTATCCTGGATCTT 11895 Query 211031 TTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGT 211090 | ||| ||||| |||||||| || || ||||| || || ||||| |||||||| || Sbjct 11896 TGCTTTGACGTTCTCGATGGTATCCGAAGCCTCAACTTCCAGGGTGATGGTCTTTCCAGT 11955 Query 211091 GAGAGTCTTTACAAACACCTGCATT 211115 || ||||| || || | ||||||| Sbjct 11956 CAGGGTCTTAACGAAGATCTGCATT 11980 Score = 104 bits (114), Expect = 5e-17 Identities = 110/145 (76%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 210971 CTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTT 211030 ||| || |||||||| || | || || |||||||||| |||||||||||||||||||| Sbjct 10763 CTTACCGGCGAAGATGAGCCTCTGCTGATCAGGAGGAATACCTTCCTTGTCCTGGATCTT 10822 Query 211031 TTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGT 211090 |||||||| || ||||| ||||| || || || || ||||| ||||| || || Sbjct 10823 AGCCTTCACGTTCTCAATGGTATCAGAAGCCTCGACTTCAAGGGTGATGGTCTTCCCGGT 10882 Query 211091 GAGAGTCTTTACAAACACCTGCATT 211115 | ||||| || || | ||||||| Sbjct 10883 CAAGGTCTTCACGAAAATCTGCATT 10907 Score = 102 bits (112), Expect = 2e-16 Identities = 107/141 (76%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 210975 CCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGT 211034 || || ||||||||||| || ||||| || |||| || || ||||||||||| ||| | Sbjct 12179 CCGGCAAAGATAAGGCGCTGCTGGTCCGGTGGAATCCCCTCTTTGTCCTGGATTTTTGCT 12238 Query 211035 TTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGA 211094 || ||||| ||||| ||||| || || || || || ||||| |||||||| || || Sbjct 12239 TTGACGTTCTCGATAGTGTCCGAAGCCTCCACTTCCAGGGTGATGGTCTTTCCTGTCAGC 12298 Query 211095 GTCTTTACAAACACCTGCATT 211115 ||||| || || | |||||| Sbjct 12299 GTCTTCACGAAGATTTGCATT 12319 Score = 86.0 bits (94), Expect = 1e-11 Identities = 106/145 (73%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 210971 CTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTT 211030 ||| || || ||||| || | || || || || || | ||||||||||| || ||||| Sbjct 11126 CTTACCGGCAAAGATGAGCCTCTGCTGATCTGGTGGGATGCCTTCCTTGTCTTGAATCTT 11185 Query 211031 TTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGT 211090 | || ||||| || || ||||| || ||| ||||| | ||||| || |||||||| Sbjct 11186 TGCCTTTACGTTCTCAATAGTGTCCGAAGCTTCGACCTCCAAGGTGATGGTTTTTCCCGT 11245 Query 211091 GAGAGTCTTTACAAACACCTGCATT 211115 || ||||| || || | ||||||| Sbjct 11246 CAGCGTCTTCACGAAGATCTGCATT 11270 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1159126217561640