Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ancylostoma_20ceylanicum_20[genbank_20GCA_5F000688135.1_202014-03- 25] 1,736 sequences; 313,092,710 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq117 98.7 2e-15 seq204 96.9 8e-15 >seq117 Length=131150 Score = 98.7 bits (108), Expect = 2e-15 Identities = 108/144 (75%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 151962 TTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTT 152021 || ||||| ||||| ||||||||||| || | | ||| |||||||| |||||||| ||| Sbjct 11127 TTACCGGCAAAGATGAGCCTCTGCTGATCTGGTGGGATGCCTTCCTTGTCTTGAATCTTT 11186 Query 152022 TGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTG 152081 || || |||| | |||| ||| || || || | || || ||||| ||||| Sbjct 11187 GCCTTTACGTTCTCAATAGTGTCCGAAGCTTCGACCTCCAAGGTGATGGTTTTTCCCGTC 11246 Query 152082 AGAGTCTTCACGAAGACCTGCATT 152105 || ||||||||||||| ||||||| Sbjct 11247 AGCGTCTTCACGAAGATCTGCATT 11270 Score = 98.7 bits (108), Expect = 2e-15 Identities = 108/144 (75%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 151962 TTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTT 152021 || || ||||||||||| | |||||| || | | ||| |||||||| || || || ||| Sbjct 11497 TTACCAGCGAAGATAAGACGCTGCTGATCTGGTGGGATCCCTTCCTTGTCCTGGATCTTT 11556 Query 152022 TGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTG 152081 |||||| |||| | |||| ||| ||| ||||| || ||||| || || || || Sbjct 11557 GCTTTGACGTTCTCGATAGTGTCCGAAGCCTCCACTTCCAGGGTAATGGTCTTTCCAGTC 11616 Query 152082 AGAGTCTTCACGAAGACCTGCATT 152105 || ||||| ||||||| ||||||| Sbjct 11617 AGGGTCTTGACGAAGATCTGCATT 11640 Score = 93.3 bits (102), Expect = 1e-13 Identities = 105/141 (74%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 151965 CCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTTTGT 152024 ||||| |||||||| | ||||||||||| | || || || || || || |||||| | Sbjct 12179 CCGGCAAAGATAAGGCGCTGCTGGTCCGGTGGAATCCCCTCTTTGTCCTGGATTTTTGCT 12238 Query 152025 TTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTGAGA 152084 ||||| |||| | |||| ||| ||| ||||| || || || || || || || || Sbjct 12239 TTGACGTTCTCGATAGTGTCCGAAGCCTCCACTTCCAGGGTGATGGTCTTTCCTGTCAGC 12298 Query 152085 GTCTTCACGAAGACCTGCATT 152105 ||||||||||||| |||||| Sbjct 12299 GTCTTCACGAAGATTTGCATT 12319 Score = 84.2 bits (92), Expect = 5e-11 Identities = 105/144 (73%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 151962 TTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTT 152021 || ||||||||||| ||||||||||| || | | || |||||||| || || || || Sbjct 10764 TTACCGGCGAAGATGAGCCTCTGCTGATCAGGAGGAATACCTTCCTTGTCCTGGATCTTA 10823 Query 152022 TGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTG 152081 || || |||| | | | || ||| ||| |||||||| || || || || || || Sbjct 10824 GCCTTCACGTTCTCAATGGTATCAGAAGCCTCGACTTCAAGGGTGATGGTCTTCCCGGTC 10883 Query 152082 AGAGTCTTCACGAAGACCTGCATT 152105 | ||||||||||| | ||||||| Sbjct 10884 AAGGTCTTCACGAAAATCTGCATT 10907 Score = 84.2 bits (92), Expect = 5e-11 Identities = 103/141 (73%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 151965 CCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTTTGT 152024 ||||| |||||||| | |||||| || | | ||||| || || ||||| || ||| | Sbjct 12906 CCGGCAAAGATAAGTCGCTGCTGATCTGGTGGAATTCCCTCTTTGTCTTGGATCTTTGCT 12965 Query 152025 TTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTGAGA 152084 || ||| | || | |||||||| ||| ||||| || || ||||| || || || | Sbjct 12966 TTCACATTTTCGATTGTGTCTGAAGCCTCCACTTCGAGCGTGATAGTCTTTCCGGTCAAT 13025 Query 152085 GTCTTCACGAAGACCTGCATT 152105 ||||||||||| | |||||| Sbjct 13026 GTCTTCACGAAAATTTGCATT 13046 >seq204 Length=107262 Score = 96.9 bits (106), Expect = 8e-15 Identities = 107/143 (75%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 151962 TTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTT 152021 || || |||||||| || | ||||||||| | | |||||||||||| || || || ||| Sbjct 83917 TTACCTGCGAAGATTAGTCGCTGCTGGTCTGGAGGGATTCCTTCCTTGTCCTGGATCTTT 83976 Query 152022 TGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTG 152081 || ||| | || | | |||| ||| ||| ||||| || || || |||||||| ||| Sbjct 83977 GCCTTTACATTTTCAATGGTGTCAGAAGCCTCCACTTCGAGCGTGATGGTTTTGCCGGTG 84036 Query 152082 AGAGTCTTCACGAAGACCTGCAT 152104 || ||||| || |||| ||||| Sbjct 84037 AGCGTCTTGACAAAGATTTGCAT 84059 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1153795136140856