Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ancylostoma_20ceylanicum_20[genbank_20GCA_5F000688135.1_202014-03- 25] 1,736 sequences; 313,092,710 total letters Query= NC_032255.1 Length=112536 Score E Sequences producing significant alignments: (Bits) Value seq204 111 1e-19 seq117 102 6e-17 seq1338 95.1 9e-15 >seq204 Length=107262 Score = 111 bits (122), Expect = 1e-19 Identities = 152/210 (72%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188 ||||| || || || |||||| ||||| ||||| || | || ||| | || || Sbjct 82274 ACCAGATGGAGAGTTGACTCCTTCTGGATATTGTAGTCCGACAGCGTGCGGCCATCCTCG 82333 Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248 |||||||| |||||||||||||| | ||||||||| | ||| | || ||||| || Sbjct 82334 AGCTGCTTTCCGGCAAAGATCAACCTCTGCTGATCAGGAGGGATTCCCTCCTTGTCTTGA 82393 Query 44249 ATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTT 44307 ||||| |||| | |||| | || ||||| | | || || || | ||| |||||||| Sbjct 82394 ATCTTGGCCTTC-ACGTTCTCAATTGTGTCTGACGCCTCGACTTCTAACGTGATCGTCTT 82452 Query 44308 TCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 || || |||||||| || ||||| ||||| Sbjct 82453 CCCAGTAAGGGTCTTTACAAAGATCTGCAT 82482 Score = 98.7 bits (108), Expect = 7e-16 Identities = 108/141 (77%), Gaps = 2/141 (1%) Strand=Plus/Plus Query 44198 CCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGC 44257 || |||||||| | |||||||| |||| ||| | || ||||| ||| ||||| || Sbjct 82942 CCTGCAAAGATTAGTCGCTGCTGGTCTGGAGGGATCCCCTCCTTGTCCTGAATCTTG-GC 83000 Query 44258 TTCAATGTTC-CTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAG 44316 || | |||| | |||||||| | | ||| ||||||| || || || ||||| ||||| Sbjct 83001 TTTCACGTTCTCGATGGTGTCAGACGCTTCGACCTCCAGGGTGATAGTTTTTCCTGTGAG 83060 Query 44317 GGTCTTCACGAAGATTTGCAT 44337 ||||||||| ||||||||||| Sbjct 83061 GGTCTTCACAAAGATTTGCAT 83081 Score = 91.5 bits (100), Expect = 1e-13 Identities = 104/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 44198 CCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGC 44257 || || ||||| | |||||||| |||| ||| | ||||| || ||| ||||| | Sbjct 82648 CCTGCGAAGATTAGTCGCTGCTGGTCTGGAGGGATTCCTTCTTTGTCCTGGATCTTTGCC 82707 Query 44258 TTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGG 44317 || | || | |||||||| | | |||||||| | ||| |||||||| || |||||| Sbjct 82708 TTTACATTTTCAATGGTGTCAGAAGCCTCCACCTCAAGCGTGATCGTCTTCCCGGTGAGG 82767 Query 44318 GTCTTCACGAAGATTTGCAT 44337 |||||||| ||||| ||||| Sbjct 82768 GTCTTCACAAAGATCTGCAT 82787 >seq117 Length=131150 Score = 102 bits (112), Expect = 6e-17 Identities = 111/145 (77%), Gaps = 2/145 (1%) Strand=Plus/Plus Query 44194 CTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTT 44253 ||| || || ||||| | |||||||||||||| || | |||||||| ||| ||||| Sbjct 11496 CTTACCAGCGAAGATAAGACGCTGCTGATCTGGTGGGATCCCTTCCTTGTCCTGGATCTT 11555 Query 44254 CTGCTTCAATGTTC-CTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCG 44312 ||||| | |||| | || ||||| | | ||||| |||| ||||| |||||||| | Sbjct 11556 -TGCTTTGACGTTCTCGATAGTGTCCGAAGCCTCCACTTCCAGGGTAATGGTCTTTCCAG 11614 Query 44313 TGAGGGTCTTCACGAAGATTTGCAT 44337 | |||||||| |||||||| ||||| Sbjct 11615 TCAGGGTCTTGACGAAGATCTGCAT 11639 Score = 93.3 bits (102), Expect = 3e-14 Identities = 109/145 (75%), Gaps = 2/145 (1%) Strand=Plus/Plus Query 44194 CTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTT 44253 ||| ||||||||||| | | ||||||||||| || | |||||||| || ||||| Sbjct 11126 CTTACCGGCAAAGATGAGCCTCTGCTGATCTGGTGGGATGCCTTCCTTGTCTTGAATCTT 11185 Query 44254 CTGCTTCAATGTTC-CTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCG 44312 ||| | | |||| | || ||||| | | ||| ||||||| || || || ||||||| Sbjct 11186 -TGCCTTTACGTTCTCAATAGTGTCCGAAGCTTCGACCTCCAAGGTGATGGTTTTTCCCG 11244 Query 44313 TGAGGGTCTTCACGAAGATTTGCAT 44337 | || |||||||||||||| ||||| Sbjct 11245 TCAGCGTCTTCACGAAGATCTGCAT 11269 Score = 93.3 bits (102), Expect = 3e-14 Identities = 109/145 (75%), Gaps = 2/145 (1%) Strand=Plus/Plus Query 44194 CTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTT 44253 ||| || || ||||| | |||||||||||||| || | |||||||| ||| ||||| Sbjct 11836 CTTACCAGCGAAGATGAGACGCTGCTGATCTGGTGGGATCCCTTCCTTATCCTGGATCTT 11895 Query 44254 CTGCTTCAATGTTC-CTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCG 44312 ||||| | |||| | ||||| || | | || || |||| || || |||||||| | Sbjct 11896 -TGCTTTGACGTTCTCGATGGTATCCGAAGCCTCAACTTCCAGGGTGATGGTCTTTCCAG 11954 Query 44313 TGAGGGTCTTCACGAAGATTTGCAT 44337 | |||||||| |||||||| ||||| Sbjct 11955 TCAGGGTCTTAACGAAGATCTGCAT 11979 Score = 87.8 bits (96), Expect = 1e-12 Identities = 108/145 (74%), Gaps = 2/145 (1%) Strand=Plus/Plus Query 44194 CTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTT 44253 ||| ||||||||||| | || ||||| |||| || | |||||||| ||| || || Sbjct 13232 CTTACCGGCAAAGATAAGGCGTTGCTGGTCTGGTGGGATCCCTTCCTTGTCCTGGAT-TT 13290 Query 44254 CTGCTTCAATGTTC-CTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCG 44312 || | | |||| | |||||||| | || ||| ||||||| || || |||||||| | Sbjct 13291 TGGCCTTTACGTTCTCAATGGTGTCCGAGGCTTCGACCTCCAGGGTGATGGTCTTTCCAG 13350 Query 44313 TGAGGGTCTTCACGAAGATTTGCAT 44337 | || ||||| |||||||| ||||| Sbjct 13351 TCAGCGTCTTGACGAAGATCTGCAT 13375 >seq1338 Length=4677894 Score = 95.1 bits (104), Expect = 9e-15 Identities = 106/142 (75%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 44198 CCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGC 44257 || || ||||| | |||||||||||| | || | || ||||| || ||||| | Sbjct 229760 CCAGCGAAGATGAGACGCTGCTGATCAGGTGGGATTCCCTCCTTGTCTTGGATCTTGGCC 229701 Query 44258 TTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGG 44317 |||| | | || ||||| | || ||| ||||| | ||| || ||||| |||||||| Sbjct 229700 TTCACATTCTCGATCGTGTCCGAGGCTTCAACCTCGAGCGTGATTGTCTTCCCCGTGAGA 229641 Query 44318 GTCTTCACGAAGATTTGCATGA 44339 |||||||||||||||||||||| Sbjct 229640 GTCTTCACGAAGATTTGCATGA 229619 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 359982783503112