Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ancylostoma_20ceylanicum_20[genbank_20GCA_5F000688135.1_202014-03- 25] 1,736 sequences; 313,092,710 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq204 143 6e-29 seq117 134 3e-26 >seq204 Length=107262 Score = 143 bits (158), Expect = 6e-29 Identities = 114/137 (83%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| || ||||| || |||||||||||||| |||||||| ||||| ||| || ||| Sbjct 83078 CAAATCTTTGTGAAGACCCTCACAGGAAAAACTATCACCCTGGAGGTCGAAGCGTCTGAC 83019 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||||||||| ||| |||||||||||||| || || |||||||| |||||||| Sbjct 83018 ACCATCGAGAACGTGAAAGCCAAGATTCAGGACAAGGAGGGGATCCCTCCAGACCAGCAG 82959 Query 178044 CGACTTATCTTCGCCGG 178060 ||||| ||||| || || Sbjct 82958 CGACTAATCTTTGCAGG 82942 Score = 131 bits (144), Expect = 4e-25 Identities = 111/137 (81%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || || || || || ||||| ||||| |||||||| |||||||| || ||| ||| Sbjct 85775 CAGATCTTTGTCAAGACCCTCACTGGAAAGACGATCACACTCGAGGTCGAGGCCTCCGAC 85716 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| ||||| ||||| ||||||||||||||||| || |||||||| ||||||||| Sbjct 85715 ACCATTGAGAATGTCAAGGCCAAGATTCAGGACAAAGAGGGTATCCCTCCTGACCAGCAA 85656 Query 178044 CGACTTATCTTCGCCGG 178060 ||||| || ||||| || Sbjct 85655 CGACTCATTTTCGCAGG 85639 Score = 125 bits (138), Expect = 2e-23 Identities = 110/137 (80%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || || ||||| || ||||| || || |||||||| || |||||||| || ||| Sbjct 82784 CAGATCTTTGTGAAGACCCTCACCGGGAAGACGATCACGCTTGAGGTGGAGGCTTCTGAC 82725 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| || || || || |||||| ||||||||||||||||||||||| |||||||| Sbjct 82724 ACCATTGAAAATGTAAAGGCAAAGATCCAGGACAAAGAAGGAATCCCTCCAGACCAGCAG 82665 Query 178044 CGACTTATCTTCGCCGG 178060 ||||| |||||||| || Sbjct 82664 CGACTAATCTTCGCAGG 82648 Score = 122 bits (134), Expect = 2e-22 Identities = 151/207 (73%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || || || || || || || || || |||||||| | || || || |||||| Sbjct 82479 CAGATCTTTGTAAAGACCCTTACTGGGAAGACGATCACGTTAGAAGTCGAGGCGTCAGAC 82420 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || |||||||| || |||||||| ||||| || ||||||||||| || ||||| Sbjct 82419 ACAATTGAGAACGTGAAGGCCAAGATTCAAGACAAGGAGGGAATCCCTCCTGATCAGCAG 82360 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 | | ||||| |||||||| |||||||| ||||| | || || | || || || || Sbjct 82359 AGGTTGATCTTTGCCGGAAAGCAGCTCGAGGATGGCCGCACGCTGTCGGACTACAATATC 82300 Query 178104 CAAAAAGAATCAACACTGCATCTTGTT 178130 || || || ||||| || ||||| ||| Sbjct 82299 CAGAAGGAGTCAACTCTCCATCTGGTT 82273 Score = 122 bits (134), Expect = 2e-22 Identities = 111/140 (79%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| || || || || ||||| || ||||| ||||| ||||| ||||| || ||| Sbjct 84056 CAAATCTTTGTCAAGACGCTCACCGGCAAAACCATCACGCTCGAAGTGGAGGCTTCTGAC 83997 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| || || || || |||||| |||||||| |||||||||||||| |||||||| Sbjct 83996 ACCATTGAAAATGTAAAGGCAAAGATCCAGGACAAGGAAGGAATCCCTCCAGACCAGCAG 83937 Query 178044 CGACTTATCTTCGCCGGAAA 178063 ||||| |||||||| || || Sbjct 83936 CGACTAATCTTCGCAGGTAA 83917 Score = 116 bits (128), Expect = 9e-21 Identities = 108/137 (79%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 |||||||| || || || ||||| ||||| |||||||| |||||||| || ||| ||| Sbjct 83386 CAAATTTTTGTCAAGACCCTCACTGGAAAGACGATCACACTCGAGGTCGAGGCCTCCGAC 83327 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| ||||| ||||| || ||||| || ||||| || || || || || |||||| Sbjct 83326 ACCATTGAGAATGTCAAGGCCAAAATTCAAGATAAAGAGGGTATTCCACCTGATCAGCAA 83267 Query 178044 CGACTTATCTTCGCCGG 178060 ||||| |||||||| || Sbjct 83266 CGACTAATCTTCGCAGG 83250 Score = 113 bits (124), Expect = 1e-19 Identities = 109/140 (78%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||||||||| ||||| || || ||||||||||| |||||||| || || || ||| Sbjct 86109 CAAATTTTCGTTAAAACGCTTACTGGAAAAACGATTACCCTCGAAGTCGAGGCATCGGAC 86050 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| ||||| ||||| || || || |||||||||||||| ||||| || ||||| Sbjct 86049 ACCATTGAGAATGTCAAGGCTAAAATCCAAGACAAAGAAGGAATTCCTCCAGATCAGCAG 85990 Query 178044 CGACTTATCTTCGCCGGAAA 178063 || | ||||| || || || Sbjct 85989 CGCTTGATCTTTGCAGGTAA 85970 >seq117 Length=131150 Score = 134 bits (148), Expect = 3e-26 Identities = 112/137 (82%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| |||||||| || || |||||||| || |||||||| || ||||| || ||| Sbjct 12315 CAAATCTTCGTGAAGACGCTGACAGGAAAGACCATCACCCTGGAAGTGGAGGCTTCGGAC 12256 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || ||||||||||||||| ||| || ||||||||||| || || || ||||||||||| Sbjct 12255 ACTATCGAGAACGTCAAAGCAAAAATCCAGGACAAAGAGGGGATTCCACCGGACCAGCAG 12196 Query 178044 CGACTTATCTTCGCCGG 178060 || |||||||| ||||| Sbjct 12195 CGCCTTATCTTTGCCGG 12179 Score = 125 bits (138), Expect = 2e-23 Identities = 110/137 (80%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||||||||| || || ||||||||||||||||| ||||||||| ||| || Sbjct 14127 CAGATCTTCGTGAAAACACTTACTGGAAAAACGATCACCCTTGAGGTGGAAGCCTCGGAT 14068 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || || || || || ||||| |||||||| |||||||| || || |||||| Sbjct 14067 ACAATTGAAAATGTAAAGGCGAAAATTCAAGACAAAGAGGGAATCCCACCCGATCAGCAA 14008 Query 178044 CGACTTATCTTCGCCGG 178060 ||||||||||| || || Sbjct 14007 CGACTTATCTTTGCTGG 13991 Score = 122 bits (134), Expect = 2e-22 Identities = 109/137 (80%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 |||||||||||||| || | || ||||| || ||||| ||||| ||||| |||||| Sbjct 13042 CAAATTTTCGTGAAGACATTGACCGGAAAGACTATCACGCTCGAAGTGGAGGCTTCAGAC 12983 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || ||||| || || ||| |||||| || |||||||| ||||| || || || ||||| Sbjct 12982 ACAATCGAAAATGTGAAAGCAAAGATCCAAGACAAAGAGGGAATTCCACCAGATCAGCAG 12923 Query 178044 CGACTTATCTTCGCCGG 178060 ||||||||||| ||||| Sbjct 12922 CGACTTATCTTTGCCGG 12906 Score = 122 bits (134), Expect = 2e-22 Identities = 111/140 (79%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||| || || || || ||||| || |||||||| ||||| ||| ||| ||| Sbjct 13372 CAGATCTTCGTCAAGACGCTGACTGGAAAGACCATCACCCTGGAGGTCGAAGCCTCGGAC 13313 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| |||||||| || || || |||||||| ||||| ||||| || ||||||||| Sbjct 13312 ACCATTGAGAACGTAAAGGCCAAAATCCAGGACAAGGAAGGGATCCCACCAGACCAGCAA 13253 Query 178044 CGACTTATCTTCGCCGGAAA 178063 || |||||||| ||||| || Sbjct 13252 CGCCTTATCTTTGCCGGTAA 13233 Score = 118 bits (130), Expect = 3e-21 Identities = 110/140 (79%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||| || || || || ||||| || || ||||| || ||||| || ||| Sbjct 11636 CAGATCTTCGTCAAGACCCTGACTGGAAAGACCATTACCCTGGAAGTGGAGGCTTCGGAC 11577 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || ||||||||||||||| |||||| |||||||| ||||| ||||| || || ||||| Sbjct 11576 ACTATCGAGAACGTCAAAGCAAAGATCCAGGACAAGGAAGGGATCCCACCAGATCAGCAG 11517 Query 178044 CGACTTATCTTCGCCGGAAA 178063 || ||||||||||| || || Sbjct 11516 CGTCTTATCTTCGCTGGTAA 11497 Score = 109 bits (120), Expect = 1e-18 Identities = 108/140 (77%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||| || || || || ||||| || |||||||| || || || || || Sbjct 11976 CAGATCTTCGTTAAGACCCTGACTGGAAAGACCATCACCCTGGAAGTTGAGGCTTCGGAT 11917 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||||||||||||| |||||| ||||| || ||||| ||||| || || ||||| Sbjct 11916 ACCATCGAGAACGTCAAAGCAAAGATCCAGGATAAGGAAGGGATCCCACCAGATCAGCAG 11857 Query 178044 CGACTTATCTTCGCCGGAAA 178063 || || |||||||| || || Sbjct 11856 CGTCTCATCTTCGCTGGTAA 11837 Score = 104 bits (114), Expect = 6e-17 Identities = 105/137 (77%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || |||||||| || || |||||||| || ||||| || ||||| || ||||| Sbjct 12639 CAGATCTTCGTGAAGACGCTGACAGGAAAGACCATCACTCTGGAGGTTGAGGCTTCAGAT 12580 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || ||||||||||| ||| ||||| || || || || || ||||| || || |||||| Sbjct 12579 ACAATCGAGAACGTGAAAGCCAAGATCCAAGATAAGGAGGGCATCCCACCCGATCAGCAA 12520 Query 178044 CGACTTATCTTCGCCGG 178060 || || |||||||| || Sbjct 12519 CGTCTCATCTTCGCTGG 12503 Score = 95.1 bits (104), Expect = 3e-14 Identities = 105/140 (75%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || ||||||||||| || | || || || || |||||||| || || || || || Sbjct 10903 CAGATTTTCGTGAAGACCTTGACCGGGAAGACCATCACCCTTGAAGTCGAGGCTTCTGAT 10844 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| |||||||| || ||||| |||||||| ||||| || ||||| || ||||| Sbjct 10843 ACCATTGAGAACGTGAAGGCTAAGATCCAGGACAAGGAAGGTATTCCTCCTGATCAGCAG 10784 Query 178044 CGACTTATCTTCGCCGGAAA 178063 | || ||||||||||| || Sbjct 10783 AGGCTCATCTTCGCCGGTAA 10764 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203704426008784