Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ancylostoma_20duodenale_20[genbank_20GCA_5F000816745.1_202015-01-16] 69,981 sequences; 332,875,813 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq7012 96.9 4e-15 seq21247 91.5 2e-13 seq20539 86.0 6e-12 seq11380 84.2 2e-11 seq2989 82.4 8e-11 >seq7012 Length=10378 Score = 96.9 bits (106), Expect = 4e-15 Identities = 139/196 (71%), Gaps = 0/196 (0%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||| | ||||| || || |||||||| || || ||||| |||| || || ||| | Sbjct 4288 ATGCAAGTCTTCGTGAAGACTCTCACGGGGAAGACAATCACGCTCGAGGTTGAGGCCTCG 4347 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | | | ||| || || | ||||| ||||| ||||| | || ||| Sbjct 4348 GACACGATCGAGAATGTGCAGGCTAAGATCCAAGACAAGGAGGGTATCCCACCTGATCAG 4407 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || || ||||||| ||| || || ||||| || || | || || || ||||||||| Sbjct 4408 CAGCGTCTCATCTTCGCTGGAAAGCAGCTCGAGGATGGCCGTACTCTGTCGGACTACAAC 4467 Query 40870 ATCCAGAAGGAGGCCA 40885 || ||||||||| ||| Sbjct 4468 ATTCAGAAGGAGTCCA 4483 >seq21247 Length=2906 Score = 91.5 bits (100), Expect = 2e-13 Identities = 102/134 (76%), Gaps = 2/134 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| ||||| || || || ||||| |||||| | || || |||||| | Sbjct 2146 ATGCAGATCTTCGTGAAAACACTTACTGGAAAAACGATCACCCTTGAGGTGGAAGCCTCG 2205 Query 40750 GACA-GCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 || | | || ||| | | |||| ||||||| ||||||||||| ||||| | || || Sbjct 2206 GATACGATTGAAAATG-TAAAGGCGAAAATTCAAGACAAAGAGGGAATCCCACCCGATCA 2264 Query 40809 GCAACGACTCATCT 40822 ||||||||| |||| Sbjct 2265 GCAACGACTTATCT 2278 >seq20539 Length=3094 Score = 86.0 bits (94), Expect = 6e-12 Identities = 147/211 (70%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 40689 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCAC 40748 |||||| || || || || || || || || || || ||||| | || ||||| || | Sbjct 386 AATGCAGATCTTTGTGAAGACCCTTACTGGGAAGACGATCACGTTAGAGGTCGAGGCGTC 327 Query 40749 CGACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACC 40807 |||| | | |||| | |||| || || | ||||| || || ||||| | || | Sbjct 326 AGACACAATCGAGAACG-TGAAGGCCAAGATCCAAGACAAGGAAGGAATCCCTCCCGATC 268 Query 40808 AGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 40867 |||| || | |||| || || || ||||| || || | ||||| || ||||||| Sbjct 267 AGCAGAGATTGATCTTTGCCGGAAAGCAGCTCGAGGATGGTCGCACGCTATCAGACTACA 208 Query 40868 ACATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 | |||||||||||| |||| || ||||| || Sbjct 207 ATATCCAGAAGGAGTCCACTCTCCATCTGGT 177 Score = 84.2 bits (92), Expect = 2e-11 Identities = 103/141 (73%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 40689 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCAC 40748 |||||| || ||||||||||| ||||| || || || ||||| |||| |||||||| | Sbjct 1301 AATGCAGATCTTCGTAAAAACCCTCACTGGAAAGACGATCACTCTCGAAGTCGAAGCTTC 1242 Query 40749 CGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | | | |||||| ||||| | || || || || || || | ||||| Sbjct 1241 TGACACCATTGAGAATGTCAAGGCTAAAATCCAAGATAAGGAAGGAATTCCACCTGACCA 1182 Query 40809 GCAACGACTCATCTACGCGGG 40829 ||||||||| || | ||| || Sbjct 1181 GCAACGACTAATTTTCGCAGG 1161 >seq11380 Length=6731 Score = 84.2 bits (92), Expect = 2e-11 Identities = 100/133 (75%), Gaps = 2/133 (2%) Strand=Plus/Minus Query 40689 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCAC 40748 ||||||||| ||||| ||||| || || || || ||||||||| | || ||||| || | Sbjct 3742 AATGCAAATCTTCGTGAAAACCCTGACAGGAAAGACCATCACCCTGGAAGTCGAGGCTTC 3683 Query 40749 CGACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACC 40807 || | | | | |||| |||||| ||||| | ||||||||||| ||||| | || | Sbjct 3682 GGATACCATCGAGAACG-TCAAGGCTAAAATCCAGGACAAAGAGGGAATCCCACCAGATC 3624 Query 40808 AGCAACGACTCAT 40820 |||| || ||||| Sbjct 3623 AGCAGCGTCTCAT 3611 Score = 84.2 bits (92), Expect = 2e-11 Identities = 97/131 (74%), Gaps = 0/131 (0%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| ||||| || || || ||||| |||||| | || || |||||| | Sbjct 5910 ATGCAGATCTTCGTGAAAACACTTACTGGAAAAACGATCACCCTTGAGGTGGAAGCCTCG 5851 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 || | | ||| | |||| ||||||| ||||||||||| ||||| | || ||| Sbjct 5850 GATACAATTGAAAATGTAAAGGCGAAAATTCAAGACAAAGAGGGAATCCCACCCGATCAG 5791 Query 40810 CAACGACTCAT 40820 |||||||| || Sbjct 5790 CAACGACTTAT 5780 >seq2989 Length=17586 Score = 82.4 bits (90), Expect = 8e-11 Identities = 132/187 (71%), Gaps = 2/187 (1%) Strand=Plus/Minus Query 40714 ACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTGCA-AACGCTCAAGGA 40772 || || || || ||||| | || |||||||| | || | | | | |||| |||| | Sbjct 16159 ACTGGAAAGACTATCACTTTGGAAGTCGAAGCTTCGGATACCATCGAGAACG-TCAAAGC 16101 Query 40773 AAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAA 40832 ||| || | ||||| || || ||||| | || ||||| || || |||| ||| | || Sbjct 16100 AAAGATCCAGGACAAGGAAGGGATCCCACCAGATCAGCAGCGTCTTATCTTCGCTAGAAA 16041 Query 40833 ACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCA 40892 ||||| || || | |||||||| || ||||||||||| || ||| |||| || || Sbjct 16040 GCAGCTAGAAGATGGTTGCACCCTCTCGGATTACAACATCCAAAAAGAGTCCACTCTCCA 15981 Query 40893 TCTAGTG 40899 ||| ||| Sbjct 15980 TCTTGTG 15974 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 514768505564560