Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ancylostoma_20duodenale_20[genbank_20GCA_5F000816745.1_202015-01-16] 69,981 sequences; 332,875,813 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq7012 123 2e-23 seq20539 100 2e-16 seq2989 95.1 1e-14 seq49065 89.7 4e-13 seq21247 84.2 2e-11 >seq7012 Length=10378 Score = 123 bits (136), Expect = 2e-23 Identities = 146/198 (74%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 118545 GACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCG 118604 ||||| || ||||||||||| || || ||| || |||||||||||| ||||||||| Sbjct 4481 GACTCCTTCTGAATGTTGTAGTCCGACAGAGTACGGCCATCCTCGAGCTGCTTTCCAGCG 4422 Query 118605 TAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACC 118664 ||||||||||||||||||| || || || |||||||||||| || || | || Sbjct 4421 AAGATGAGACGCTGCTGATCAGGTGGGATACCCTCCTTGTCTTGGATCTTAGCCTGCACA 4362 Query 118665 TGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTT 118724 | |||| ||||||| | ||| ||||||| || | || || || || ||||| || Sbjct 4361 TTCTCGATCGTGTCCGAGGCCTCAACCTCGAGCGTGATTGTCTTCCCCGTGAGAGTCTTC 4302 Query 118725 ACAAAAATCTGCATGGCT 118742 || || | |||||| || Sbjct 4301 ACGAAGACTTGCATGACT 4284 >seq20539 Length=3094 Score = 100 bits (110), Expect = 2e-16 Identities = 150/211 (71%), Gaps = 4/211 (2%) Strand=Plus/Plus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGT--ATCCT 118587 |||| |||| || ||||| || || || ||||| || | |||| | ||| ||||| Sbjct 177 ACCAGATGGAGAGTGGACTCCTTCTGGATATTGTAGTC--TGATAGCGTGCGACCATCCT 234 Query 118588 CGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTG 118647 ||||||| ||||| || |||| | | ||||||||||||||| || || ||||||||| Sbjct 235 CGAGCTGCTTTCCGGCAAAGATCAATCTCTGCTGATCGGGAGGGATTCCTTCCTTGTCTT 294 Query 118648 TAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTT 118707 || || || || | |||| ||||| | ||||||||| | || | ||| | Sbjct 295 GGATCTTGGCCTTCACGTTCTCGATTGTGTCTGACGCCTCGACCTCTAACGTGATCGTCT 354 Query 118708 TGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 | || || || || || ||||| |||||||| Sbjct 355 TCCCAGTAAGGGTCTTCACAAAGATCTGCAT 385 Score = 87.8 bits (96), Expect = 2e-12 Identities = 105/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 118596 TTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTT 118655 || ||||| |||| || ||||||||||| ||||| ||||| || |||||| ||| || Sbjct 850 TTACCAGCAAAGATCAGTCGCTGCTGATCCGGAGGAATGCCTTCTTTGTCTTGAATCTTG 909 Query 118656 TGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTC 118715 || || | ||||| ||||| | ||||||||| | || | |||||| || || Sbjct 910 GCCTTCACATTTTCGATTGTGTCTGACGCCTCGACCTCCAGAGTGATCGTTTTCCCAGTG 969 Query 118716 AGAGTTTTTACAAAAATCTGCAT 118738 || || || ||||| |||||||| Sbjct 970 AGGGTCTTCACAAAGATCTGCAT 992 Score = 82.4 bits (90), Expect = 7e-11 Identities = 106/144 (74%), Gaps = 2/144 (1%) Strand=Plus/Plus Query 118596 TTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTT 118655 || ||||| | || || ||||||||||| ||||| || || || |||||| ||||| Sbjct 2456 TTACCAGCAAAAATCAGGCGCTGCTGATCAGGAGGAATTCCTTCTTTGTCTTGGATTTTG 2515 Query 118656 TGTTTAACCTGTTCGACGGTGTCCG-TGCTCTCGACCTCGACGGTCACCGTTTTGCCGGT 118714 || || | |||| |||||| | ||| |||||||||| ||| | ||| || || || Sbjct 2516 GCCTTGACATTCTCGATGGTGTCAGACGCT-TCGACCTCGAGGGTAATCGTCTTTCCAGT 2574 Query 118715 CAGAGTTTTTACAAAAATCTGCAT 118738 || ||||| || ||||| ||||| Sbjct 2575 AAGCGTTTTAACGAAAATTTGCAT 2598 >seq2989 Length=17586 Score = 95.1 bits (104), Expect = 1e-14 Identities = 149/211 (71%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 118529 CACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTC 118588 ||||||||||| ||| || ||||| || || ||||| ||| | ||| || ||||| Sbjct 15746 CACCAAGTGGAGTGTGGATTCTTTCTGGATATTGTAGTCGGAAAGAGTACGACCGTCCTC 15805 Query 118589 GAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGT 118648 ||| ||||| || ||| | || || | ||||||||| | ||| || || || ||||| Sbjct 15806 GAGTTGTTTGCCGGCGAATATAAGCCTCTGCTGATCTGCAGGAATACCTTCTTTGTCCTG 15865 Query 118649 AATTTTTTGTTTAACCTGTTCGACGGTGTCCG-TGCTCTCGACCTCGACGGTCACCGTTT 118707 || || || || | || | |||||||| |||| |||| || | ||| | || | Sbjct 15866 GATCTTGGCCTTTACGTTCTCAATGGTGTCCGAAGCTC-CGACTTCAAGGGTGATGGTCT 15924 Query 118708 TGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 | || ||||| || || || || |||||||| Sbjct 15925 TCCCTGTCAGCGTCTTCACGAAGATCTGCAT 15955 Score = 91.5 bits (100), Expect = 1e-13 Identities = 111/150 (74%), Gaps = 1/150 (1%) Strand=Plus/Plus Query 118532 CAAG-TGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGA 118590 |||| |||| || ||||||||||| ||||||||||| | |||| ||| || | Sbjct 15976 CAAGATGGAGAGTGGACTCTTTTTGGATGTTGTAATCCGAGAGGGTGCAACCATCTTCTA 16035 Query 118591 GCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAA 118650 |||| |||| |||| |||| |||||||||||||| || || || || |||||||| | Sbjct 16036 GCTGCTTTCTAGCGAAGATAAGACGCTGCTGATCTGGTGGGATCCCTTCCTTGTCCTGGA 16095 Query 118651 TTTTTTGTTTAACCTGTTCGACGGTGTCCG 118680 | ||| ||| || | |||| ||| |||| Sbjct 16096 TCTTTGCTTTGACGTTCTCGATGGTATCCG 16125 >seq49065 Length=1973 Score = 89.7 bits (98), Expect = 4e-13 Identities = 106/144 (74%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 118599 CCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGT 118658 |||||| ||||||||||||||||||| || || || ||||||||||| || || Sbjct 1702 CCAGCGAAGATGAGACGCTGCTGATCAGGTGGGATTCCCTCCTTGTCCTGGATCTTGGCC 1761 Query 118659 TTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGA 118718 || || | ||||| ||||||| | ||| ||||||| || | || || || || ||| Sbjct 1762 TTCACATTTTCGATCGTGTCCGAGGCCTCAACCTCGAGCGTGATTGTCTTCCCCGTGAGA 1821 Query 118719 GTTTTTACAAAAATCTGCATGGCT 118742 || || || || || |||||| || Sbjct 1822 GTCTTCACGAAGATTTGCATGACT 1845 >seq21247 Length=2906 Score = 84.2 bits (92), Expect = 2e-11 Identities = 105/144 (73%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 118596 TTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTT 118655 || ||||| |||| || || ||||||||||| || || ||||| |||||| |||||| Sbjct 2288 TTACCAGCAAAGATAAGTCGTTGCTGATCGGGTGGGATTCCCTCTTTGTCTTGAATTTTC 2229 Query 118656 TGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTC 118715 || || | ||| | || |||| | || ||||| | ||| | |||||| || || Sbjct 2228 GCCTTTACATTTTCAATCGTATCCGAGGCTTCCACCTCAAGGGTGATCGTTTTTCCAGTA 2169 Query 118716 AGAGTTTTTACAAAAATCTGCATG 118739 || ||||| || || ||||||||| Sbjct 2168 AGTGTTTTCACGAAGATCTGCATG 2145 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433460388898852