Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ancylostoma_20duodenale_20[genbank_20GCA_5F000816745.1_202015-01-16] 69,981 sequences; 332,875,813 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq51893 95.1 1e-14 seq12562 95.1 1e-14 seq62828 91.5 2e-13 seq44678 91.5 2e-13 seq44196 91.5 2e-13 seq18555 91.5 2e-13 seq7980 91.5 2e-13 seq6847 91.5 2e-13 seq19671 86.0 7e-12 seq5733 86.0 7e-12 seq4576 86.0 7e-12 seq24224 84.2 2e-11 seq9257 84.2 2e-11 >seq51893 Length=1680 Score = 95.1 bits (104), Expect = 1e-14 Identities = 72/84 (86%), Gaps = 1/84 (1%) Strand=Plus/Plus Query 60054 ATGAAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACA 60113 ||| |||| || |||| |||| |||||| |||||| |||||| | ||||||||||| | Sbjct 1484 ATGCAAAACTT-CTCCCCGGCCGGGAATTGAACCCGGGTCTCGCACGTGACAGGCGCGGA 1542 Query 60114 TACTCACCACTATACTACCGAGGA 60137 |||||||||||||||||||||||| Sbjct 1543 TACTCACCACTATACTACCGAGGA 1566 >seq12562 Length=6188 Score = 95.1 bits (104), Expect = 1e-14 Identities = 72/84 (86%), Gaps = 1/84 (1%) Strand=Plus/Plus Query 60054 ATGAAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACA 60113 ||| |||| || |||| |||| |||||| |||||| |||||| | ||||||||||| | Sbjct 176 ATGCAAAACTT-CTCCCCGGCCGGGAATTGAACCCGGGTCTCGCACGTGACAGGCGCGGA 234 Query 60114 TACTCACCACTATACTACCGAGGA 60137 |||||||||||||||||||||||| Sbjct 235 TACTCACCACTATACTACCGAGGA 258 >seq62828 Length=1153 Score = 91.5 bits (100), Expect = 2e-13 Identities = 71/85 (84%), Gaps = 0/85 (0%) Strand=Plus/Minus Query 60054 ATGAAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACA 60113 ||| |||| |||||| |||| |||||| |||||| |||||| | ||||||| || | Sbjct 812 ATGCAAAACATTCTCCCCGGCCGGGAATTGAACCCGGGTCTCGCATGTGACAGACGCGGA 753 Query 60114 TACTCACCACTATACTACCGAGGAT 60138 ||||||||||||||||||||||||| Sbjct 752 TACTCACCACTATACTACCGAGGAT 728 >seq44678 Length=3340 Score = 91.5 bits (100), Expect = 2e-13 Identities = 71/85 (84%), Gaps = 0/85 (0%) Strand=Plus/Minus Query 60054 ATGAAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACA 60113 ||| |||| |||||| |||| |||||| |||||| |||||| | ||||||| || | Sbjct 1347 ATGCAAAACATTCTCCCCGGCCGGGAATTGAACCCGGGTCTCGCATGTGACAGACGCGGA 1288 Query 60114 TACTCACCACTATACTACCGAGGAT 60138 ||||||||||||||||||||||||| Sbjct 1287 TACTCACCACTATACTACCGAGGAT 1263 >seq44196 Length=3650 Score = 91.5 bits (100), Expect = 2e-13 Identities = 71/85 (84%), Gaps = 0/85 (0%) Strand=Plus/Minus Query 60054 ATGAAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACA 60113 ||| |||| |||||| |||| |||||| |||||| |||||| | ||||||| || | Sbjct 692 ATGCAAAAGATTCTCCCCGGCCGGGAATTGAACCCGGGTCTCGCATGTGACAGACGCGGA 633 Query 60114 TACTCACCACTATACTACCGAGGAT 60138 ||||||||||||||||||||||||| Sbjct 632 TACTCACCACTATACTACCGAGGAT 608 >seq18555 Length=3993 Score = 91.5 bits (100), Expect = 2e-13 Identities = 71/85 (84%), Gaps = 0/85 (0%) Strand=Plus/Minus Query 60054 ATGAAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACA 60113 ||| |||| |||||| |||| |||||| |||||| |||||| | ||||||| || | Sbjct 2533 ATGCAAAAGATTCTCCCCGGCCGGGAATTGAACCCGGGTCTCGCATGTGACAGACGCGGA 2474 Query 60114 TACTCACCACTATACTACCGAGGAT 60138 ||||||||||||||||||||||||| Sbjct 2473 TACTCACCACTATACTACCGAGGAT 2449 >seq7980 Length=9080 Score = 91.5 bits (100), Expect = 2e-13 Identities = 71/85 (84%), Gaps = 0/85 (0%) Strand=Plus/Plus Query 60054 ATGAAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACA 60113 ||| |||| |||||| |||| |||||| |||||| |||||| | ||||||| || | Sbjct 957 ATGCAAAACATTCTCCCCGGCCGGGAATTGAACCCGGGTCTCGCATGTGACAGACGCGGA 1016 Query 60114 TACTCACCACTATACTACCGAGGAT 60138 ||||||||||||||||||||||||| Sbjct 1017 TACTCACCACTATACTACCGAGGAT 1041 >seq6847 Length=11183 Score = 91.5 bits (100), Expect = 2e-13 Identities = 71/85 (84%), Gaps = 0/85 (0%) Strand=Plus/Plus Query 60054 ATGAAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACA 60113 ||| |||| |||||| |||| |||||| |||||| |||||| | ||||||| || | Sbjct 8563 ATGCAAAACATTCTCCCCGGCCGGGAATTGAACCCGGGTCTCGCATGTGACAGACGCGGA 8622 Query 60114 TACTCACCACTATACTACCGAGGAT 60138 ||||||||||||||||||||||||| Sbjct 8623 TACTCACCACTATACTACCGAGGAT 8647 >seq19671 Length=3327 Score = 86.0 bits (94), Expect = 7e-12 Identities = 67/80 (84%), Gaps = 0/80 (0%) Strand=Plus/Plus Query 60058 AAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACT 60117 |||| |||||| |||| |||||| |||||| |||||| | ||||||| || ||||| Sbjct 2947 AAAACATTCTCCCCGGCCGGGAATTGAACCCGGGTCTCGCATGTGACAGACGCGGATACT 3006 Query 60118 CACCACTATACTACCGAGGA 60137 |||||||||||||||||||| Sbjct 3007 CACCACTATACTACCGAGGA 3026 >seq5733 Length=11969 Score = 86.0 bits (94), Expect = 7e-12 Identities = 70/85 (82%), Gaps = 0/85 (0%) Strand=Plus/Minus Query 60054 ATGAAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACA 60113 ||| |||| |||||| |||| |||||| |||||| |||||| | ||||||| || | Sbjct 2432 ATGCAAAACATTCTCCCCGGCCGGGAATTGAACCCGGGTCTCGCATGTGACAGACGCGGA 2373 Query 60114 TACTCACCACTATACTACCGAGGAT 60138 |||||||||||||| |||||||||| Sbjct 2372 TACTCACCACTATATTACCGAGGAT 2348 >seq4576 Length=13685 Score = 86.0 bits (94), Expect = 7e-12 Identities = 70/85 (82%), Gaps = 0/85 (0%) Strand=Plus/Plus Query 60054 ATGAAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACA 60113 ||| |||| ||||| |||| |||||| |||||| |||||| | ||||||| || | Sbjct 11292 ATGCAAAAGACTCTCCCCGGCCGGGAATTGAACCCGGGTCTCGCATGTGACAGACGCGGA 11351 Query 60114 TACTCACCACTATACTACCGAGGAT 60138 ||||||||||||||||||||||||| Sbjct 11352 TACTCACCACTATACTACCGAGGAT 11376 >seq24224 Length=2156 Score = 84.2 bits (92), Expect = 2e-11 Identities = 69/84 (82%), Gaps = 0/84 (0%) Strand=Plus/Plus Query 60055 TGAAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACAT 60114 || |||| |||||| |||| |||||| ||| || |||||| | ||||||| || || Sbjct 2001 TGCAAAAGATTCTCCCCGGCCGGGAATTGAAGCCGGGTCTCGCATGTGACAGACGCGAAT 2060 Query 60115 ACTCACCACTATACTACCGAGGAT 60138 |||||||||||||||||||||||| Sbjct 2061 ACTCACCACTATACTACCGAGGAT 2084 >seq9257 Length=8014 Score = 84.2 bits (92), Expect = 2e-11 Identities = 69/84 (82%), Gaps = 0/84 (0%) Strand=Plus/Plus Query 60055 TGAAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACAT 60114 || |||| | |||| |||| |||||| |||||| |||||| | ||||||| || || Sbjct 3441 TGCAAAAGGTACTCCCCGGCCGGGAATTGAACCCGGGTCTCGCATGTGACAGACGCGGAT 3500 Query 60115 ACTCACCACTATACTACCGAGGAT 60138 |||||||||||||||||||||||| Sbjct 3501 ACTCACCACTATACTACCGAGGAT 3524 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571317395406680