Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ancylostoma_20duodenale_20[genbank_20GCA_5F000816745.1_202015-01-16] 69,981 sequences; 332,875,813 total letters Query= NC_002593.1 Length=100999 Score E Sequences producing significant alignments: (Bits) Value seq7012 89.7 3e-13 seq2989 86.0 4e-12 >seq7012 Length=10378 Score = 89.7 bits (98), Expect = 3e-13 Identities = 139/199 (70%), Gaps = 0/199 (0%) Strand=Plus/Minus Query 34199 TCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAA 34258 || ||||| ||||||||||| ||||| |||| | || || | |||||| || ||||| Sbjct 4478 TCCTTCTGAATGTTGTAGTCCGACAGAGTACGGCCATCCTCGAGCTGCTTTCCAGCGAAG 4419 Query 34259 ATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCG 34318 ||||| |||||||| || || | | ||||||||| ||||| || | || Sbjct 4418 ATGAGACGCTGCTGATCAGGTGGGATACCCTCCTTGTCTTGGATCTTAGCCTGCACATTC 4359 Query 34319 GCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACA 34378 | |||| || | | || || || | |||||| || || || |||||||| ||||| Sbjct 4358 TCGATCGTGTCCGAGGCCTCAACCTCGAGCGTGATTGTCTTCCCCGTGAGAGTCTTCACG 4299 Query 34379 AAGATCTGCATCGCTCGAA 34397 |||| ||||| ||| || Sbjct 4298 AAGACTTGCATGACTCAAA 4280 >seq2989 Length=17586 Score = 86.0 bits (94), Expect = 4e-12 Identities = 146/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCG 34237 ||||||| ||| | || ||||||||| || ||||||||||| || ||| |||| Sbjct 15744 AGCACCAAGTGGAGTGTGGATTCTTTCTGGATATTGTAGTCGGAAAGAGTACGACCGTCC 15803 Query 34238 TCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCG 34297 || | || ||||| ||||| || |||| |||||| || | || | | || ||||| Sbjct 15804 TCGAGTTGTTTGCCGGCGAATATAAGCCTCTGCTGATCTGCAGGAATACCTTCTTTGTCC 15863 Query 34298 GCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTT 34357 ||||| ||||| | | || | || | | | |||| || | |||||||| Sbjct 15864 TGGATCTTGGCCTTTACGTTCTCAATGGTGTCCGAAGCTCCGACTTCAAGGGTGATGGTC 15923 Query 34358 TTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || || || || || ||||| ||||||||||| Sbjct 15924 TTCCCTGTCAGCGTCTTCACGAAGATCTGCAT 15955 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 322796454011360